HHsearch alignment for GI: 254780328 and conserved domain: COG1091
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=2.1e-38 Score=256.64 Aligned_cols=271 Identities=21% Similarity=0.241 Sum_probs=224.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEECHHHCCCCCC
Q ss_conf 79996878827799999999879889999268767521302386798426899999999875698899957144011223
Q gi|254780328|r 5 NVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISES 84 (333)
Q Consensus 5 kIlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~~d~ViHlAa~~~~~~~ 84 (333)
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~--------------~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~a 66 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAE--------------LDITDPDAVLEVIRETRPDVVINAAAYTAVDKA 66 (281)
T ss_pred CEEEECCCCHHHHHHHHHHC-CCCEEEECCCCC--------------CCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf 58997698767999999717-784399515765--------------555685899999986199989987320365413
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43100123301233322211222222222222333322222222222222222222222222223332222222222222
Q gi|254780328|r 85 VKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLR 164 (333)
Q Consensus 85 ~~~p~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vYG~~~~~~~~E~~~~~p~~~Yg~sK~~~E~~~~~~~~~~~~~ 164 (333)
T Consensus 67 E~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~sKl~GE~~v~~~~~----~ 141 (281)
T COG1091 67 ESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEEAVRAAGP----R 141 (281)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCC-EEEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC----C
T ss_conf 389899777677999999999997197-69996344574389898887789999702454778978999997399----8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 22222222222222222222333332222222222222222222222222222232211001111100000001110023
Q gi|254780328|r 165 SVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALEYLIN 244 (333)
Q Consensus 165 ~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~ 244 (333)
T Consensus 142 ~~I~Rtswv~g~~g-----------~nFv~tml~la~~-~~~l~vv~D--------q~gsPt~~~dlA~~i~~ll~~~~- 200 (281)
T COG1091 142 HLILRTSWVYGEYG-----------NNFVKTMLRLAKE-GKELKVVDD--------QYGSPTYTEDLADAILELLEKEK- 200 (281)
T ss_pred EEEEEEEEEECCCC-----------CCHHHHHHHHHHC-CCCEEEECC--------EEECCCCHHHHHHHHHHHHHCCC-
T ss_conf 79998565545888-----------7789999998505-992699798--------45387469999999999983455-
Q ss_pred CCCCCEEEEECCCCEEHHHHHHHHHHHHCCCCCEE-EC-----CCCCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 58731036417998029999999999837898759-85-----7898886222127089999818876107999999999
Q gi|254780328|r 245 QGDSIAINLGTGTGITVKEIISTIQSMYECAFPIT-YE-----SRRIGDPPSLVADNKKAKKILGWNPKYKLRDIIESAW 318 (333)
Q Consensus 245 ~~~~~~~Nig~~~~~si~~l~~~i~~~~g~~~~i~-~~-----~~~~~~~~~~~~d~~k~~~~LGw~p~~~leegi~~~i 318 (333)
T Consensus 201 --~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~~~~~~-~w~~~l~~~~ 277 (281)
T COG1091 201 --EGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLP-EWREALKALL 277 (281)
T ss_pred --CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC-CHHHHHHHHH
T ss_conf --5867998079741199999999998388864145556223676678975554252889997488982-5999999997
Q ss_pred H
Q ss_conf 9
Q gi|254780328|r 319 N 319 (333)
Q Consensus 319 ~ 319 (333)
T Consensus 278 ~ 278 (281)
T COG1091 278 D 278 (281)
T ss_pred H
T ss_conf 3