HHsearch alignment for GI: 254780328 and conserved domain: COG2910

>COG2910 Putative NADH-flavin reductase [General function prediction only].
Probab=98.90  E-value=1.5e-09  Score=78.31  Aligned_cols=200  Identities=17%  Similarity=0.071  Sum_probs=127.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEECHHHCCCCC
Q ss_conf             47999687882779999999987988999926876752130238679842689999999987569889995714401122
Q gi|254780328|r    4 KNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISE   83 (333)
Q Consensus         4 kkIlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~~d~ViHlAa~~~~~~   83 (333)
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~-~~~~~i~q~Difd~~~~a~~l~g~--DaVIsA~~~~~---   74 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA-RQGVTILQKDIFDLTSLASDLAGH--DAVISAFGAGA---   74 (211)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECHHHCCC-CCCCEEECCCCCCHHHHHHHHCCC--CEEEEECCCCC---
T ss_conf             907899537456799999998679804899807676652-235302000222745667663587--66997215788---


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             34310012330123332221122222222222233332-22222222222222222222222222233322222222222
Q gi|254780328|r   84 SVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCA-TYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNG  162 (333)
Q Consensus        84 ~~~~p~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~-vYG~~~~~~~~E~~~~~p~~~Yg~sK~~~E~~~~~~~~~~~  162 (333)
T Consensus        75 --~~~~~~~~---k~~~~li~~l~~agv~RllVVGGAGSL~id~g--~rLvD~p~fP~ey~~~A~~~ae~L-~~Lr~~~~  146 (211)
T COG2910          75 --SDNDELHS---KSIEALIEALKGAGVPRLLVVGGAGSLEIDEG--TRLVDTPDFPAEYKPEALAQAEFL-DSLRAEKS  146 (211)
T ss_pred             --CCHHHHHH---HHHHHHHHHHHHCCCEEEEEECCCCCEEECCC--CEEECCCCCCHHHHHHHHHHHHHH-HHHHHCCC
T ss_conf             --87157788---89999999986159705999847420587688--455058998566779998778999-99863567


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             22222222222222222222223333322222222222222222222222222222322110011111000000011100
Q gi|254780328|r  163 LRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALEYL  242 (333)
Q Consensus       163 ~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~  242 (333)
T Consensus       147 l~WTfvSPaa~f~PGerT--g~yr--------------l-ggD~ll~-n~-----~G~---SrIS~aDYAiA~lDe~E~~  200 (211)
T COG2910         147 LDWTFVSPAAFFEPGERT--GNYR--------------L-GGDQLLV-NA-----KGE---SRISYADYAIAVLDELEKP  200 (211)
T ss_pred             CCEEEECCHHHCCCCCCC--CCEE--------------E-CCCEEEE-CC-----CCC---EEEEHHHHHHHHHHHHHCC
T ss_conf             645996717845776556--8567--------------6-3635777-48-----885---0344899999999877464


Q ss_pred             C
Q ss_conf             2
Q gi|254780328|r  243 I  243 (333)
Q Consensus       243 ~  243 (333)
T Consensus       201 ~  201 (211)
T COG2910         201 Q  201 (211)
T ss_pred             C
T ss_conf             5