HHsearch alignment for GI: 254780328 and conserved domain: COG2910
>COG2910 Putative NADH-flavin reductase [General function prediction only].
Probab=98.90 E-value=1.5e-09 Score=78.31 Aligned_cols=200 Identities=17% Similarity=0.071 Sum_probs=127.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEECHHHCCCCC
Q ss_conf 47999687882779999999987988999926876752130238679842689999999987569889995714401122
Q gi|254780328|r 4 KNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISE 83 (333)
Q Consensus 4 kkIlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~~d~ViHlAa~~~~~~ 83 (333)
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~-~~~~~i~q~Difd~~~~a~~l~g~--DaVIsA~~~~~--- 74 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA-RQGVTILQKDIFDLTSLASDLAGH--DAVISAFGAGA--- 74 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECHHHCCC-CCCCEEECCCCCCHHHHHHHHCCC--CEEEEECCCCC---
T ss_conf 907899537456799999998679804899807676652-235302000222745667663587--66997215788---
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34310012330123332221122222222222233332-22222222222222222222222222233322222222222
Q gi|254780328|r 84 SVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCA-TYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNG 162 (333)
Q Consensus 84 ~~~~p~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~-vYG~~~~~~~~E~~~~~p~~~Yg~sK~~~E~~~~~~~~~~~ 162 (333)
T Consensus 75 --~~~~~~~~---k~~~~li~~l~~agv~RllVVGGAGSL~id~g--~rLvD~p~fP~ey~~~A~~~ae~L-~~Lr~~~~ 146 (211)
T COG2910 75 --SDNDELHS---KSIEALIEALKGAGVPRLLVVGGAGSLEIDEG--TRLVDTPDFPAEYKPEALAQAEFL-DSLRAEKS 146 (211)
T ss_pred --CCHHHHHH---HHHHHHHHHHHHCCCEEEEEECCCCCEEECCC--CEEECCCCCCHHHHHHHHHHHHHH-HHHHHCCC
T ss_conf --87157788---89999999986159705999847420587688--455058998566779998778999-99863567
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 22222222222222222222223333322222222222222222222222222222322110011111000000011100
Q gi|254780328|r 163 LRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALEYL 242 (333)
Q Consensus 163 ~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~ 242 (333)
T Consensus 147 l~WTfvSPaa~f~PGerT--g~yr--------------l-ggD~ll~-n~-----~G~---SrIS~aDYAiA~lDe~E~~ 200 (211)
T COG2910 147 LDWTFVSPAAFFEPGERT--GNYR--------------L-GGDQLLV-NA-----KGE---SRISYADYAIAVLDELEKP 200 (211)
T ss_pred CCEEEECCHHHCCCCCCC--CCEE--------------E-CCCEEEE-CC-----CCC---EEEEHHHHHHHHHHHHHCC
T ss_conf 645996717845776556--8567--------------6-3635777-48-----885---0344899999999877464
Q ss_pred C
Q ss_conf 2
Q gi|254780328|r 243 I 243 (333)
Q Consensus 243 ~ 243 (333)
T Consensus 201 ~ 201 (211)
T COG2910 201 Q 201 (211)
T ss_pred C
T ss_conf 5