HHsearch alignment for GI: 254780328 and conserved domain: TIGR01214

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=100.00  E-value=2.6e-41  Score=274.64  Aligned_cols=290  Identities=19%  Similarity=0.234  Sum_probs=237.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEECHHHCCCCCC
Q ss_conf             79996878827799999999879889999268767521302386798426899999999875698899957144011223
Q gi|254780328|r    5 NVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISES   84 (333)
Q Consensus         5 kIlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~~d~ViHlAa~~~~~~~   84 (333)
T Consensus         1 rilitGa~GQlG~~L~~~l~~~g~~~~~~~~~----~~~~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~VD~A   76 (317)
T TIGR01214         1 RILITGANGQLGRELVQQLSKPGRVVVALTRS----TRLKLAARWSQLDLTDPEALEELLRAIRPDAVVNTAAYTDVDGA   76 (317)
T ss_pred             CEEEECCCCHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCHHCCCCCC
T ss_conf             97887387567999999707888278643687----77611336544062246889999985287537623011010000


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             43100123301233322211222222222222333322222----22222222222222222222222333222222222
Q gi|254780328|r   85 VKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGI----PHNTIITENDPQESITPYGYTKYVVERELLQHNKV  160 (333)
Q Consensus        85 ~~~p~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vYG~----~~~~~~~E~~~~~p~~~Yg~sK~~~E~~~~~~~~~  160 (333)
T Consensus        77 E~~~~~AyavNa~A~~~lA~~A~~~Ga-~~vh~STDYVFDGdfGG~~~~PY~e~D~~nPlnvYG~SK~~GE~a~~~~~~~  155 (317)
T TIGR01214        77 ESDPEKAYAVNALAPQNLARAAARVGA-RLVHISTDYVFDGDFGGEGKRPYREDDETNPLNVYGQSKLAGEQAVRAAGPD  155 (317)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCC-EEEEEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             377778765740789999999986691-5999863423447557888668876468798431211156899999983799


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             2222222222222222222222223333322222222222-222222222222222222322110011111000000011
Q gi|254780328|r  161 NGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTA-MGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMAL  239 (333)
Q Consensus       161 ~~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~i~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~  239 (333)
T Consensus       156 e--~~lIvRTsWlY~~~g~--------~g~NF~~tMlrLaG~~-~~~l~vV~DQ~----G----sPTy~~dLA~~~~~ll  216 (317)
T TIGR01214       156 E--NALIVRTSWLYGAGGG--------SGRNFVKTMLRLAGKE-REELRVVDDQI----G----SPTYAKDLARAIAALL  216 (317)
T ss_pred             C--CEEEEEEEEEECCCCC--------CCCCHHHHHHHHCCCC-CCCEEEEECCC----C----CHHHHHHHHHHHHHHH
T ss_conf             8--5788985213448998--------8421799999853789-98403785576----8----7358999999999999


Q ss_pred             HHC-----CCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCCC---CE--EECCC-------CCCCCCEEEECHHHHHHHH
Q ss_conf             100-----2358731036417998029999999999837898---75--98578-------9888622212708999981
Q gi|254780328|r  240 EYL-----INQGDSIAINLGTGTGITVKEIISTIQSMYECAF---PI--TYESR-------RIGDPPSLVADNKKAKKIL  302 (333)
Q Consensus       240 ~~~-----~~~~~~~~~Nig~~~~~si~~l~~~i~~~~g~~~---~i--~~~~~-------~~~~~~~~~~d~~k~~~~L  302 (333)
T Consensus       217 ~~~~Wdv~~~a~~~GvYH~~~~G~~SWyeFA~~If~~~~~~g~~~~~~~~v~Pis~~~yp~pA~RPayS~Ld~~~~~~~~  296 (317)
T TIGR01214       217 ERLNWDVEDAARARGVYHLANSGQVSWYEFAQAIFEVAGECGLLLKVPEEVKPISSKEYPTPARRPAYSVLDNTKLVKTL  296 (317)
T ss_pred             HHHCCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             76133400101367346775054313688999999999854710487200010113207789988643044568999960


Q ss_pred             C---CCCCCCHHHHHHHHHH
Q ss_conf             8---8761079999999999
Q gi|254780328|r  303 G---WNPKYKLRDIIESAWN  319 (333)
Q Consensus       303 G---w~p~~~leegi~~~i~  319 (333)
T Consensus       297 g~P~~~lp-~Wr~al~~~l~  315 (317)
T TIGR01214       297 GKPLLVLP-DWREALRAVLK  315 (317)
T ss_pred             CCCCCCCC-CHHHHHHHHHH
T ss_conf             86667998-78999999974