HHsearch alignment for GI: 254780328 and conserved domain: TIGR01777
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=99.95 E-value=7.5e-29 Score=197.61 Aligned_cols=274 Identities=18% Similarity=0.236 Sum_probs=190.7
Q ss_pred EEEECC-CCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH-CCC----CEEEE--ECCCHHHHHHHHHHCCCCEEEECHH
Q ss_conf 999687-882779999999987988999926876752130-238----67984--2689999999987569889995714
Q gi|254780328|r 6 VLVVGG-AGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFV-LWG----PLEQV--DICDYTNLRAVFAKYQPASVMHFAG 77 (333)
Q Consensus 6 IlItG~-tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~~~-~~~----~~~~~--Di~d~~~l~~~~~~~~~d~ViHlAa 77 (333)
T Consensus 1 ~litGgnTGfiG~~L~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-W-~~l~~--~DaviNLAG 76 (307)
T TIGR01777 1 ILITGGNTGFIGRALTQRLTKSGHEVTILTRSPQAESNTKKVGYKNWLAEGKLGIVIAESG-W-SALEG--ADAVINLAG 76 (307)
T ss_pred CEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCHHC-C-CCCCC--CCEEEECCC
T ss_conf 9641533023789999999847998999961686432000255445555221245207220-5-66788--627985568
Q ss_pred HCCC---CCCCCCCEEEEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4011---2234310012330123332221122222-----2222222333322222222222222222222222222223
Q gi|254780328|r 78 LTNI---SESVKNPSLFYEINIKGSFNLIATAIES-----NVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYV 149 (333)
Q Consensus 78 ~~~~---~~~~~~p~~~~~~Nv~gt~~ll~~~~~~-----~~~~~i~~SS~~vYG~~~~~~~~E~~~~~p~~~Yg~sK~~ 149 (333)
T Consensus 77 ~~i~~P~RWt~~~K~~i~~SRi~~T~~L~~~i~~~~r~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~~~~ddF-la~lc 155 (307)
T TIGR01777 77 EPIADPKRWTEERKQEIRDSRIDTTRALVEAIAAAPRAEQKPKVFISASAVGYYGHSEDRVFTEEDASGPGDDF-LAELC 155 (307)
T ss_pred CCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCCCCCC-HHHHH
T ss_conf 88577888787775756523347899999999846566788716885016663068998215116678887772-18999
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3322222-222222222222222222222222222233333222222222222222222222222222223221100111
Q gi|254780328|r 150 VERELLQ-HNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHV 228 (333)
Q Consensus 150 ~E~~~~~-~~~~~~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v 228 (333)
T Consensus 156 ~~WE~~A~~a~~~g~Rvv~~R~G~VLg~~GG------------aL~~m~~-------pf~~-glGGplG~G~Q~~SWIH~ 215 (307)
T TIGR01777 156 RDWEEAAQAAEQLGTRVVLLRTGIVLGPKGG------------ALAKMLP-------PFRL-GLGGPLGSGRQWFSWIHI 215 (307)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEECCCCC------------CHHHHHH-------HHHH-HCCCCCCCCCCCCCHHHH
T ss_conf 9999985105336873898764134708987------------0345456-------6765-157423688414505358
Q ss_pred CCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCCCCEEECCC-----CCCCCCEEEECH-----HHH
Q ss_conf 1100000001110023587310364179980299999999998378987598578-----988862221270-----899
Q gi|254780328|r 229 LDLANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESR-----RIGDPPSLVADN-----KKA 298 (333)
Q Consensus 229 ~D~~~a~~~~~~~~~~~~~~~~~Nig~~~~~si~~l~~~i~~~~g~~~~i~~~~~-----~~~~~~~~~~d~-----~k~ 298 (333)
T Consensus 216 ~D~v~~I~~~l~~~~~---~Gp~N~tAP~Pv~n~~F~~~la~~l~RP~~~~-vP~~~~~~~LGe~a~~~L~gQrV~P~kl 291 (307)
T TIGR01777 216 EDLVQLILFALENASV---SGPVNATAPEPVRNKEFAKALARALHRPAFLP-VPAFVLRLLLGEMADLLLKGQRVLPEKL 291 (307)
T ss_pred HHHHHHHHHHHHCCCC---CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999855899---63254107886357899999999818970101-1089999884255888986578999999
Q ss_pred HHHHCCCCCCC
Q ss_conf 99818876107
Q gi|254780328|r 299 KKILGWNPKYK 309 (333)
Q Consensus 299 ~~~LGw~p~~~ 309 (333)
T Consensus 292 ~~-~GF~F~Y~ 301 (307)
T TIGR01777 292 LE-AGFQFQYP 301 (307)
T ss_pred HH-CCCEEECC
T ss_conf 97-49766213