HHsearch alignment for GI: 254780328 and conserved domain: TIGR03325

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=99.53  E-value=5.4e-15  Score=111.95  Aligned_cols=231  Identities=16%  Similarity=0.132  Sum_probs=136.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH----CCCCEEEEECCCHHHHHHHHHH----C-CCCE
Q ss_conf             96447999687882779999999987988999926876752130----2386798426899999999875----6-9889
Q gi|254780328|r    1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFV----LWGPLEQVDICDYTNLRAVFAK----Y-QPAS   71 (333)
Q Consensus         1 m~~kkIlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~~~----~~~~~~~~Di~d~~~l~~~~~~----~-~~d~   71 (333)
T Consensus         3 L~gKvalITGgs~GIG~aia~~~a~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~~G~iDi   82 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDC   82 (262)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf             89988999067878999999999987999999989989999999867996799984579999999999999998499888


Q ss_pred             EEECHHHCCCCCCC---------CCCEEEEEECCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99571440112234---------31001233012333222112222----222222223333222222222222222222
Q gi|254780328|r   72 VMHFAGLTNISESV---------KNPSLFYEINIKGSFNLIATAIE----SNVRRFIFSSTCATYGIPHNTIITENDPQE  138 (333)
Q Consensus        72 ViHlAa~~~~~~~~---------~~p~~~~~~Nv~gt~~ll~~~~~----~~~~~~i~~SS~~vYG~~~~~~~~E~~~~~  138 (333)
T Consensus        83 LVnNAG~~~~~~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~~~------------  150 (262)
T TIGR03325        83 LIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPNG------------  150 (262)
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC------------
T ss_conf             99726516877643458624149999999999749999999999999997098189998710324889------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22222222223332222222222222222222222222222222223333322222222222222222222222222222
Q gi|254780328|r  139 SITPYGYTKYVVERELLQHNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRD  218 (333)
Q Consensus       139 p~~~Yg~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~d  218 (333)
T Consensus       151 ~~~~Y~asKaal~~ltr~lA~e~~-~~--IRV-NaV~PG~i~T--~~~~~~~---~~~~~~~~~---~~~~---~~~~~~  215 (262)
T TIGR03325       151 GGPLYTAAKHAVVGLVKELAFELA-PY--VRV-NGVAPGGMSS--DLRGPKS---LGMADKSIS---TVPL---GDMLKS  215 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHC-CC--CEE-EEEEECCCCC--CCCCCCC---CCHHHHHHC---CCHH---HHHHHC
T ss_conf             966899999999999999999975-99--789-9995378887--9867544---313555421---1058---999970


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCC-CCCCEEEEECCCC
Q ss_conf             322110011111000000011100235-8731036417998
Q gi|254780328|r  219 GTCLRDYIHVLDLANAHIMALEYLINQ-GDSIAINLGTGTG  258 (333)
Q Consensus       219 g~~~Rdfi~v~D~~~a~~~~~~~~~~~-~~~~~~Nig~~~~  258 (333)
T Consensus       216 ~~PlgR~g~peeia~av~fL~s~~~s~~iTG~~l~VDGG~~  256 (262)
T TIGR03325       216 VLPIGRMPDAEEYTGAYVFFATRGDTVPATGAVLNYDGGMG  256 (262)
T ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCHHCCEECCEEEECCCCC
T ss_conf             79989983999999999998198022694586889794710