HHsearch alignment for GI: 254780328 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=100.00 E-value=0 Score=383.80 Aligned_cols=294 Identities=24% Similarity=0.332 Sum_probs=233.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHH-HCCCCEEEEECCCHHHHHHHHHHCCCCEEEECHHHCCCC
Q ss_conf 4799968788277999999998798899992687675213-023867984268999999998756988999571440112
Q gi|254780328|r 4 KNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEF-VLWGPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNIS 82 (333)
Q Consensus 4 kkIlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~~-~~~~~~~~~Di~d~~~l~~~~~~~~~d~ViHlAa~~~~~ 82 (333)
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~gDl~d~~~~~~~~~~--~d~ViH~Aa~~~-- 76 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLERGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKALAG--CRALFHVAADYR-- 76 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHC--CCEEEEECCCCC--
T ss_conf 9499986777999999999997849899998999865565217977998207999999999717--858976134234--
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCC
Q ss_conf 234310012330123332221122222222222233332222222-2222222222222---222222223332222222
Q gi|254780328|r 83 ESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPH-NTIITENDPQESI---TPYGYTKYVVERELLQHN 158 (333)
Q Consensus 83 ~~~~~p~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vYG~~~-~~~~~E~~~~~p~---~~Yg~sK~~~E~~~~~~~ 158 (333)
T Consensus 77 ~~~~~~~~~~~~Nv~gt~nll~aa~~~~v~r~V~~SS~~v~g~~~~~~~~~E~~p~~~~~~~~~Y~~sK~~aE~~~~~~~ 156 (328)
T TIGR03466 77 LWAPDPEEMYRANVEGTRNLLRAALEAGVERVVYTSSVATLGVPGDGTPADETTPSSLEKMIGHYKRSKFLAEEAALRMI 156 (328)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 46799899999999999999999997298743156335785578888740256765456665778899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 22222222222222222222222222333332222222222222222222222222222232211001111100000001
Q gi|254780328|r 159 KVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMA 238 (333)
Q Consensus 159 ~~~~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~ 238 (333)
T Consensus 157 ~~~gl~~~ilRp~~v~Gp~d~~~-----~----~~~~~i~~~~~~~~p~--~~--------~~g~~~v~V~Dva~a~~~a 217 (328)
T TIGR03466 157 AEKGLPVVIVNPSTPIGPRDIKP-----T----PTGRIIVDFLRGKMPA--YV--------DTGLNLVHVDDVAEGHLLA 217 (328)
T ss_pred HHCCCCEEEECCCCEECCCCCCC-----C----CHHHHHHHHHCCCCCE--EE--------CCCCEEEEEHHHHHHHHHH
T ss_conf 97299759977785688998888-----7----6699999997599976--75--------5871899838999999999
Q ss_pred HHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCCCCEEECCCCC---------------C-C-----------CCEE
Q ss_conf 11002358731036417998029999999999837898759857898---------------8-8-----------6222
Q gi|254780328|r 239 LEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRI---------------G-D-----------PPSL 291 (333)
Q Consensus 239 ~~~~~~~~~~~~~Nig~~~~~si~~l~~~i~~~~g~~~~i~~~~~~~---------------~-~-----------~~~~ 291 (333)
T Consensus 218 ~~~~---~~g~~y~~~-~~~~t~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~ 293 (328)
T TIGR03466 218 LERG---RIGERYILG-GENLTLAQILAKLAEITGRKAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTLDGVRMAKKKM 293 (328)
T ss_pred HHCC---CCCCEEEEC-CCCCCHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf 7579---989879979-997109999999999858998711057378888899999988741999876467776415663
Q ss_pred EECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1270899998188761079999999999999724
Q gi|254780328|r 292 VADNKKAKKILGWNPKYKLRDIIESAWNWHLKYP 325 (333)
Q Consensus 292 ~~d~~k~~~~LGw~p~~~leegi~~~i~~~~~~~ 325 (333)
T Consensus 294 ~~d~~kA~~~LG~~p~-~~eegl~~tv~W~~~nG 326 (328)
T TIGR03466 294 YFSSDKAVRELGYRQR-PAREALRDAVEWFRANG 326 (328)
T ss_pred CCCHHHHHHHHCCCCC-CHHHHHHHHHHHHHHCC
T ss_conf 1177999998299978-89999999999999868