HHsearch alignment for GI: 254780328 and conserved domain: TIGR03589
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=100.00 E-value=0 Score=323.31 Aligned_cols=247 Identities=21% Similarity=0.226 Sum_probs=204.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCCC--HH---HHCCCCEEEEECCCHHHHHHHHHHCCCCEEE
Q ss_conf 964479996878827799999999879--8899992687675--21---3023867984268999999998756988999
Q gi|254780328|r 1 MENKNVLVVGGAGYIGAHTCRVLYERG--FLPIVLDNLSSGH--AE---FVLWGPLEQVDICDYTNLRAVFAKYQPASVM 73 (333)
Q Consensus 1 m~~kkIlItG~tGfiGs~l~~~L~~~g--~~v~~~d~~~~~~--~~---~~~~~~~~~~Di~d~~~l~~~~~~~~~d~Vi 73 (333)
T Consensus 2 ~~~K~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~~~~~~i~f~~gDIrD~~~l~~~~~~--vD~Vf 79 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRG--VDYVV 79 (324)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCC--CCEEE
T ss_conf 9939999907977999999999997299828999668640328898516898759996777788999976348--88999
Q ss_pred ECHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 57144011223431001233012333222112222222222223333222222222222222222222222222233322
Q gi|254780328|r 74 HFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVERE 153 (333)
Q Consensus 74 HlAa~~~~~~~~~~p~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vYG~~~~~~~~E~~~~~p~~~Yg~sK~~~E~~ 153 (333)
T Consensus 80 HaAA~khVp~se~nP~e~i~tNV~Gt~nlleaa~~~~Vkk~V~iSTDka--------------~~P~n~yGasK~~~E~l 145 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA--------------ANPINLYGATKLASDKL 145 (324)
T ss_pred ECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC--------------CCCCCCCCCCHHHHHHH
T ss_conf 9462776726776989999999799999999988555431786226888--------------89967431236767999
Q ss_pred CC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22---222222222222222222222222222223333322222222222222222222222222222322110011111
Q gi|254780328|r 154 LL---QHNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLD 230 (333)
Q Consensus 154 ~~---~~~~~~~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v~D 230 (333)
T Consensus 146 ~~~~~~~~~~~~~~~~~vRygNV~gsrg------------SViP~F~~qi~~g~~~~~i-------td~~mtRf~mtv~d 206 (324)
T TIGR03589 146 FVAANNISGSKGTRFSVVRYGNVVGSRG------------SVVPFFKSLKEEGVTELPI-------TDPRMTRFWITLEQ 206 (324)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCCC------------CCHHHHHHHHHCCCCCCCC-------CCCCEEEEEEEHHH
T ss_conf 9999985078886378863327518886------------6399999999839997444-------99980799888999
Q ss_pred CCCCCHHHHHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCCCCEEECCCCCCCCCE
Q ss_conf 000000011100235873103641799802999999999983789875985789888622
Q gi|254780328|r 231 LANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPS 290 (333)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~Nig~~~~~si~~l~~~i~~~~g~~~~i~~~~~~~~~~~~ 290 (333)
T Consensus 207 av~lV~~a~~~---~~~GEifv~-k~~s~~i~dla~~~~----~~~~~k~iG~RpGEKl~ 258 (324)
T TIGR03589 207 GVNFVLKSLER---MLGGEIFVP-KIPSMKITDLAEAMA----PECPHKIVGIRPGEKLH 258 (324)
T ss_pred HHHHHHHHHHH---CCCCEEEEC-CCCCCHHHHHHHHHH----CCCCEEECCCCCCHHHH
T ss_conf 99999999982---889849983-697025999999860----46986145788860234