HHsearch alignment for GI: 254780328 and conserved domain: cd01491
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.70 E-value=0.026 Score=33.51 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=61.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCHHHHCCCCEEEEEC--CCHHHHHHHHHHCCCCEEEECHH
Q ss_conf 9644799968788277999999998798-89999268767521302386798426--89999999987569889995714
Q gi|254780328|r 1 MENKNVLVVGGAGYIGAHTCRVLYERGF-LPIVLDNLSSGHAEFVLWGPLEQVDI--CDYTNLRAVFAKYQPASVMHFAG 77 (333)
Q Consensus 1 m~~kkIlItG~tGfiGs~l~~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~Di--~d~~~l~~~~~~~~~d~ViHlAa 77 (333)
T Consensus 17 l~~s~Vli~G~~g-lg~Ei~Knlvl~Gv~~i~i~D~~~v~~~dl~~qf~~~~~dvg~~ra~~~~~~l~~lNp~v~v~~~~ 95 (286)
T cd01491 17 LQKSNVLISGLGG-LGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVST 95 (286)
T ss_pred HHHCCEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9759299999876-399999999973996599995996886776347225777857888999999999648982589635
Q ss_pred HCCCCCCCCCCEEEE--EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 401122343100123--301233322211222222222222333322222
Q gi|254780328|r 78 LTNISESVKNPSLFY--EINIKGSFNLIATAIESNVRRFIFSSTCATYGI 125 (333)
Q Consensus 78 ~~~~~~~~~~p~~~~--~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vYG~ 125 (333)
T Consensus 96 ~~~~~~~~~~fdvVv~t~~~~~~~~~iN~~cR~~~i-~Fi~~~~~G~~G~ 144 (286)
T cd01491 96 GPLTTDELLKFQVVVLTDASLEDQLKINEFCHSPGI-KFISADTRGLFGS 144 (286)
T ss_pred CCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCCCEEE
T ss_conf 777888853888899918998999999888877598-1999505775799