HHsearch alignment for GI: 254780328 and conserved domain: cd01493
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=95.34 E-value=0.022 Score=33.95 Aligned_cols=123 Identities=11% Similarity=0.152 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCHHHHCCCCEEEEECCC--HHHHHHHHHHCCCCEEEECHH
Q ss_conf 9644799968788277999999998798-8999926876752130238679842689--999999987569889995714
Q gi|254780328|r 1 MENKNVLVVGGAGYIGAHTCRVLYERGF-LPIVLDNLSSGHAEFVLWGPLEQVDICD--YTNLRAVFAKYQPASVMHFAG 77 (333)
Q Consensus 1 m~~kkIlItG~tGfiGs~l~~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~Di~d--~~~l~~~~~~~~~d~ViHlAa 77 (333)
T Consensus 18 l~~s~VLiiG~~g-lG~EiaKNLvLaGV~svti~D~~~v~~~DLg~nFfl~~~diGk~Raea~~~~L~eLNp~V~v~~~~ 96 (425)
T cd01493 18 LESAHVCLLNATA-TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVE 96 (425)
T ss_pred HHHCCEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9769399999971-199999872132897699995991878885766156677858839999999999847868547870
Q ss_pred HCCCCCCCCCC------EEEEEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40112234310------01233012--33322211222222222222333322222
Q gi|254780328|r 78 LTNISESVKNP------SLFYEINI--KGSFNLIATAIESNVRRFIFSSTCATYGI 125 (333)
Q Consensus 78 ~~~~~~~~~~p------~~~~~~Nv--~gt~~ll~~~~~~~~~~~i~~SS~~vYG~ 125 (333)
T Consensus 97 ~~~~~~~~~~~~~~~~f~vVV~t~~~~~~~~~in~~cr~~~i-~fI~~~~~Gl~G~ 151 (425)
T cd01493 97 ESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANI-PLLYVRSYGLYGY 151 (425)
T ss_pred CCHHHHHHCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCC-CEEEEEEECCEEE
T ss_conf 687886426876752833899828899999999999998699-7899982446699