HHsearch alignment for GI: 254780328 and conserved domain: pfam04321
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=100.00 E-value=0 Score=383.29 Aligned_cols=277 Identities=21% Similarity=0.267 Sum_probs=238.4
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEECHHHCCCCCCC
Q ss_conf 99968788277999999998798899992687675213023867984268999999998756988999571440112234
Q gi|254780328|r 6 VLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISESV 85 (333)
Q Consensus 6 IlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~~d~ViHlAa~~~~~~~~ 85 (333)
T Consensus 1 ILVtG~~GfiGs~l~~~L~~~g~~v~~~~r~--------------~~D~~d~~~l~~~~~~~~pd~VihlAa~~~~~~~~ 66 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAERGVEVVALDRP--------------ELDLTDPEAVAALVREARPDVVVNAAAYTAVDKAE 66 (284)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEECCC--------------CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHH
T ss_conf 6996489989999999998689989995486--------------25788999999999864997999724135556777
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31001233012333222112222222222223333222222222222222222222222222233322222222222222
Q gi|254780328|r 86 KNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRS 165 (333)
Q Consensus 86 ~~p~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vYG~~~~~~~~E~~~~~p~~~Yg~sK~~~E~~~~~~~~~~~~~~ 165 (333)
T Consensus 67 ~~~~~~~~~Nv~~t~~l~~~~~~~~~-~~i~~Ss~~Vy~g~~~~p~~E~~~~~P~~~Yg~sK~~~E~~~~~~~----~~~ 141 (284)
T pfam04321 67 SEPELAYAVNALGPGNLAEACAARGA-PLIHISTDYVFDGAKGGPYREDDPTGPLNVYGRTKLAGEQAVLAAN----PRH 141 (284)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHCCC-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC----CCC
T ss_conf 48888998759999999999874498-5798417530006899885457777898801657589999999725----346
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 22222222222222222223333322222222222222222222222222222322110011111000000011100235
Q gi|254780328|r 166 VVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALEYLINQ 245 (333)
Q Consensus 166 ~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~ 245 (333)
T Consensus 142 ~IlR~~~vyG~~~~-----------~~~~~~~~~~~~-~~~i~i~~--------d~~~~~~~v~D~a~~~~~~~e~~~~~ 201 (284)
T pfam04321 142 LILRTAWVYGEYGN-----------NFVKTMLRLAAE-RDELRVVD--------DQLGSPTSARDLADALLALIRKRLRG 201 (284)
T ss_pred EEEEEEEECCCCCC-----------CHHHHHHHHHHC-CCCCEEEC--------CCCCCCEEHHHHHHHHHHHHHHCCCC
T ss_conf 07877344288887-----------889999999862-89826853--------75689698999999999999820337
Q ss_pred -CCCCEEEEECCCCEEHHHHHHHHHHHHCCCCC-EEECC-----CCCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf -87310364179980299999999998378987-59857-----898886222127089999818876107999999999
Q gi|254780328|r 246 -GDSIAINLGTGTGITVKEIISTIQSMYECAFP-ITYES-----RRIGDPPSLVADNKKAKKILGWNPKYKLRDIIESAW 318 (333)
Q Consensus 246 -~~~~~~Nig~~~~~si~~l~~~i~~~~g~~~~-i~~~~-----~~~~~~~~~~~d~~k~~~~LGw~p~~~leegi~~~i 318 (333)
T Consensus 202 ~~~~giyNi~~~~~~s~~ela~~i~~~~g~~~~~i~~v~~~~~~~~~~rP~~~~lD~sK~~~~lg~~p~-~~~egl~~~l 280 (284)
T pfam04321 202 PALAGTYHLAGSGETSWYDFARAIFDEAGADGGRVRPIPTAEYPTPARRPANSVLDTSKLEATFGIPLP-DWREALAEVL 280 (284)
T ss_pred CCCCCCEEECCCCCEEHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC-CHHHHHHHHH
T ss_conf 777761374189844099999999999688877426611888887899976001559999997687999-8999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780328|r 319 NWHL 322 (333)
Q Consensus 319 ~~~~ 322 (333)
T Consensus 281 ~~~~ 284 (284)
T pfam04321 281 DELL 284 (284)
T ss_pred HHHC
T ss_conf 9969