BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase
[Candidatus Liberibacter asiaticus str. psy62]
(333 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 333
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/333 (100%), Positives = 333/333 (100%)
Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNL 60
MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNL
Sbjct: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNL 60
Query: 61 RAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTC 120
RAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTC
Sbjct: 61 RAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTC 120
Query: 121 ATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFNAAGATLDS 180
ATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFNAAGATLDS
Sbjct: 121 ATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFNAAGATLDS 180
Query: 181 IIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALE 240
IIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALE
Sbjct: 181 IIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALE 240
Query: 241 YLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPSLVADNKKAKK 300
YLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPSLVADNKKAKK
Sbjct: 241 YLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPSLVADNKKAKK 300
Query: 301 ILGWNPKYKLRDIIESAWNWHLKYPRSLSNEHE 333
ILGWNPKYKLRDIIESAWNWHLKYPRSLSNEHE
Sbjct: 301 ILGWNPKYKLRDIIESAWNWHLKYPRSLSNEHE 333
>gi|254780920|ref|YP_003065333.1| dTDP-glucose 4,6-dehydratase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 358
Score = 84.0 bits (206), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 48/344 (13%)
Query: 6 VLVVGGAGYIGAHTCRVLY-ERGFLPIVLDNLS-SGH-------AEFVLWGPLEQVDICD 56
++V GGAG+IG+ CR L + +V+D L+ +G+ ++ L+ L QVDICD
Sbjct: 3 LIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFL-QVDICD 61
Query: 57 YTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIA---------TAI 107
+R+ ++QP ++++FA +++ S+ F NI G+F L+ +
Sbjct: 62 RECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQD 121
Query: 108 ESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVV 167
+ + RF+ ST YG + +E+ P +PY TK + +L G+ ++
Sbjct: 122 KKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIPVLL 181
Query: 168 LRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIH 227
+ + G +H PE +IPLAI + + F ++G DG +RD+++
Sbjct: 182 --------SNCSNNYGPYHFPEK-LIPLAITRMIEGSHVF-LYG------DGQNVRDWLY 225
Query: 228 VLDLANAHIMALEYLINQGD-SIAINLGTGTGITVKEIISTIQSMYECAFPITYES---- 282
V D H+ AL ++ +G N+G +I+ I + + P +Y
Sbjct: 226 VED----HVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELI 281
Query: 283 RRIGDPPS----LVADNKKAKKILGWNPKYKLRDIIESAWNWHL 322
R I D P D+ K K +GW P+ + + W+L
Sbjct: 282 RFIEDRPGHDRRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYL 325
>gi|254780307|ref|YP_003064720.1| aspartate-semialdehyde dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 335
Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 6 VLVVGGAGYIGAHTCRVLYERGF 28
V VVG G +G ++ ERGF
Sbjct: 5 VAVVGATGNVGREMLNIICERGF 27
>gi|254780500|ref|YP_003064913.1| hypothetical protein CLIBASIA_01935 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 159
Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 173 AAGATLDSIIGEWHNPETHVIPLAIKTAMGY 203
+ +++ + NP H IP I+TA G+
Sbjct: 117 VSSVSMERLPNRRFNPNPHTIPAPIQTADGF 147
>gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus Liberibacter asiaticus str. psy62]
Length = 276
Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 181 IIGEWHNPETHVIPLAIKTAMGYQNSF--------KVFGQDY--ATRDGTCLRDYIHVLD 230
I+G W+ P + A+ A Y +F +V+G +Y A L Y+ V +
Sbjct: 73 IMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHPTLPLPSYVRVTN 132
Query: 231 LANA 234
+ N
Sbjct: 133 MENG 136
>gi|254780198|ref|YP_003064611.1| hypothetical protein CLIBASIA_00415 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 69
Score = 23.1 bits (48), Expect = 6.9, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 26 RGFLPIVLDNLS-------SGHAEFVLWGPLEQV 52
R FLP +L ++ SGH F+L+ PL +
Sbjct: 33 RVFLPFLLISIMIVHITHISGHVNFLLFPPLSMI 66
>gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 311
Score = 22.7 bits (47), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 85 VKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTIITENDPQE 138
+ NP Y+ N + A E + ++ S YGI I++ N P E
Sbjct: 250 LSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNAPPE 303
>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
Liberibacter asiaticus str. psy62]
Length = 675
Score = 22.7 bits (47), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 161 NGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVF 210
NG V Y A +D + + E I ++ A+GYQ KVF
Sbjct: 404 NGEDIYVTTYAKAFNTPIDKV-----SKEQRAIGKVMELALGYQGGAKVF 448
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,548
Number of Sequences: 1233
Number of extensions: 8943
Number of successful extensions: 35
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 10
length of query: 333
length of database: 328,796
effective HSP length: 74
effective length of query: 259
effective length of database: 237,554
effective search space: 61526486
effective search space used: 61526486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)