BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str. psy62] (333 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str. psy62] Length = 333 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/333 (100%), Positives = 333/333 (100%) Query: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNL 60 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNL Sbjct: 1 MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNL 60 Query: 61 RAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTC 120 RAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTC Sbjct: 61 RAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTC 120 Query: 121 ATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFNAAGATLDS 180 ATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFNAAGATLDS Sbjct: 121 ATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFNAAGATLDS 180 Query: 181 IIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALE 240 IIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALE Sbjct: 181 IIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALE 240 Query: 241 YLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPSLVADNKKAKK 300 YLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPSLVADNKKAKK Sbjct: 241 YLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPSLVADNKKAKK 300 Query: 301 ILGWNPKYKLRDIIESAWNWHLKYPRSLSNEHE 333 ILGWNPKYKLRDIIESAWNWHLKYPRSLSNEHE Sbjct: 301 ILGWNPKYKLRDIIESAWNWHLKYPRSLSNEHE 333 >gi|254780920|ref|YP_003065333.1| dTDP-glucose 4,6-dehydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 358 Score = 84.0 bits (206), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 48/344 (13%) Query: 6 VLVVGGAGYIGAHTCRVLY-ERGFLPIVLDNLS-SGH-------AEFVLWGPLEQVDICD 56 ++V GGAG+IG+ CR L + +V+D L+ +G+ ++ L+ L QVDICD Sbjct: 3 LIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFL-QVDICD 61 Query: 57 YTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIA---------TAI 107 +R+ ++QP ++++FA +++ S+ F NI G+F L+ + Sbjct: 62 RECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQD 121 Query: 108 ESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVV 167 + + RF+ ST YG + +E+ P +PY TK + +L G+ ++ Sbjct: 122 KKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIPVLL 181 Query: 168 LRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIH 227 + + G +H PE +IPLAI + + F ++G DG +RD+++ Sbjct: 182 --------SNCSNNYGPYHFPEK-LIPLAITRMIEGSHVF-LYG------DGQNVRDWLY 225 Query: 228 VLDLANAHIMALEYLINQGD-SIAINLGTGTGITVKEIISTIQSMYECAFPITYES---- 282 V D H+ AL ++ +G N+G +I+ I + + P +Y Sbjct: 226 VED----HVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELI 281 Query: 283 RRIGDPPS----LVADNKKAKKILGWNPKYKLRDIIESAWNWHL 322 R I D P D+ K K +GW P+ + + W+L Sbjct: 282 RFIEDRPGHDRRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYL 325 >gi|254780307|ref|YP_003064720.1| aspartate-semialdehyde dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 335 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 13/23 (56%) Query: 6 VLVVGGAGYIGAHTCRVLYERGF 28 V VVG G +G ++ ERGF Sbjct: 5 VAVVGATGNVGREMLNIICERGF 27 >gi|254780500|ref|YP_003064913.1| hypothetical protein CLIBASIA_01935 [Candidatus Liberibacter asiaticus str. psy62] Length = 159 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 9/31 (29%), Positives = 16/31 (51%) Query: 173 AAGATLDSIIGEWHNPETHVIPLAIKTAMGY 203 + +++ + NP H IP I+TA G+ Sbjct: 117 VSSVSMERLPNRRFNPNPHTIPAPIQTADGF 147 >gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus Liberibacter asiaticus str. psy62] Length = 276 Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 10/64 (15%) Query: 181 IIGEWHNPETHVIPLAIKTAMGYQNSF--------KVFGQDY--ATRDGTCLRDYIHVLD 230 I+G W+ P + A+ A Y +F +V+G +Y A L Y+ V + Sbjct: 73 IMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHPTLPLPSYVRVTN 132 Query: 231 LANA 234 + N Sbjct: 133 MENG 136 >gi|254780198|ref|YP_003064611.1| hypothetical protein CLIBASIA_00415 [Candidatus Liberibacter asiaticus str. psy62] Length = 69 Score = 23.1 bits (48), Expect = 6.9, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 7/34 (20%) Query: 26 RGFLPIVLDNLS-------SGHAEFVLWGPLEQV 52 R FLP +L ++ SGH F+L+ PL + Sbjct: 33 RVFLPFLLISIMIVHITHISGHVNFLLFPPLSMI 66 >gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 22.7 bits (47), Expect = 9.2, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 85 VKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTIITENDPQE 138 + NP Y+ N + A E + ++ S YGI I++ N P E Sbjct: 250 LSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNAPPE 303 >gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] Length = 675 Score = 22.7 bits (47), Expect = 9.7, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%) Query: 161 NGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVF 210 NG V Y A +D + + E I ++ A+GYQ KVF Sbjct: 404 NGEDIYVTTYAKAFNTPIDKV-----SKEQRAIGKVMELALGYQGGAKVF 448 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.136 0.413 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 219,548 Number of Sequences: 1233 Number of extensions: 8943 Number of successful extensions: 35 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 10 length of query: 333 length of database: 328,796 effective HSP length: 74 effective length of query: 259 effective length of database: 237,554 effective search space: 61526486 effective search space used: 61526486 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)