HHsearch alignment of GI: 254780329 and MMDB domain: 1vmb_A_
>1vmb_A (A:) 30S ribosomal protein S6; TM0603, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.70A {Thermotoga maritima}
Probab=99.96 E-value=1.7e-29 Score=193.09 Aligned_cols=109 Identities=18% Similarity=0.393 Sum_probs=101.2
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCHHHHHHHHHHH
Q ss_conf 987059999878999999999999999999856-9789997036865353032224189999999808977999999980
Q gi|254780329|r 1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQEN-GGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKM 79 (135)
Q Consensus 1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~-gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~l 79 (135)
|+.||+++|++|+++++++..+++++.++|.++ ||.|.++++||.|+|||+|+|+++|+|++|.|.++|+++.+|++.|
T Consensus 18 M~~YE~~~Il~p~~~~~~~~~~~~~~~~~i~~~~Gg~I~~~~~~G~r~LaY~IkK~~~G~Y~~~~f~~~p~~i~el~~~l 97 (140)
T 1vmb_A 18 ERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYTVIYFRCDGQNLQELENFY 97 (140)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSTHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHH
T ss_conf 44001999989999989999999999999985589889897602333554523437889999999506867899999987
Q ss_pred CCCCHHEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 898021001124411345564357653212
Q gi|254780329|r 80 RIDENVLRSLTLLVDSHEQSPTLTIQRHDR 109 (135)
Q Consensus 80 k~~~~VLR~l~vk~~~~~~~~~~~~~~~~~ 109 (135)
++|++||||++||+++....+++.......
T Consensus 98 r~~~~VlR~l~vk~~~~~~~~~~~~~~~~~ 127 (140)
T 1vmb_A 98 RVTPEIIRWQTFRRFDLEKKERKAQREKAA 127 (140)
T ss_dssp HTCTTEEEEEEEECHHHHHHHHHHHC----
T ss_pred CCCCCEEEEEEEECCCCCCCCCHHHHCCCC
T ss_conf 067573589999804554450333331210