HHsearch alignment of GI: 254780329 and MMDB domain: 3i1m_F_
>3i1m_F (F:) 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ...
Probab=99.96 E-value=3.9e-30 Score=196.81 Aligned_cols=108 Identities=30% Similarity=0.555 Sum_probs=101.4
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCHHHHHHHHHHHC
Q ss_conf 98705999987899999999999999999985697899970368653530322241899999998089779999999808
Q gi|254780329|r 1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKMR 80 (135)
Q Consensus 1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~lk 80 (135)
|++||+|||++|+++ +++.++++++.++|.++||+|.++++||+|+|||+|+|+++|+|++|+|+++|+.+.+|++.|+
T Consensus 1 M~~YE~~~il~~~~~-~e~~~~i~~~~~~i~~~gg~i~~v~~~G~r~LaY~Ikk~~~G~Y~~~~f~~~~~~i~el~~~l~ 79 (135)
T 3i1m_F 1 MRHYEIVFMVHPDQS-EQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFR 79 (135)
T ss_dssp CCEECBEEEECSTTT-TSHHHHHHHHHHHHHHTTCEECCCEEEEEECCSSCTTSSSCEEEEECCEECCTTHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCH-HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 986239999688817-8999999999999986898899875113434675267787799999983489899999999970
Q ss_pred CCCHHEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 98021001124411345564357653212
Q gi|254780329|r 81 IDENVLRSLTLLVDSHEQSPTLTIQRHDR 109 (135)
Q Consensus 81 ~~~~VLR~l~vk~~~~~~~~~~~~~~~~~ 109 (135)
+|++|||||+||+++....+++.......
T Consensus 80 ~~~~VlR~~~vk~~~~~~~~~~~~~~~~~ 108 (135)
T 3i1m_F 80 FNDAVIRSMVMRTKHAVTEASPMVKAKDE 108 (135)
T ss_dssp HCSSEESCCBCCCSSCCCSCC--------
T ss_pred CCHHHEEEEEEEECCCCCCCCHHHHHHHH
T ss_conf 36400044788723566675754420122