HHsearch results for GI: 254780329 and protein with PDBid: 1cqm_A
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=99.97 E-value=4e-31 Score=201.75 Aligned_cols=101 Identities=24% Similarity=0.451 Sum_probs=98.1
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCHHHHHHHHHHHC
Q ss_conf 98705999987899999999999999999985697899970368653530322241899999998089779999999808
Q gi|254780329|r 1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKMR 80 (135)
Q Consensus 1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~lk 80 (135)
||+||+++|++|++++++++++++++.++|+++||+|.++++||+|+|||||+|+++|+|++++|+++|+.+.+|++.|+
T Consensus 1 Mr~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~~G~r~LAY~Ikk~~~G~Y~~~~f~~~~~~i~el~~~l~ 80 (101)
T 1cqm_A 1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR 80 (101)
T ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEECCCCCEEEEEEEEEEECHHHHHHHHHHHC
T ss_conf 98623999988999989999999999999876898899986122012752337667899999999979999999999856
Q ss_pred CCCHHEEEEEEEECCCCCCCC
Q ss_conf 980210011244113455643
Q gi|254780329|r 81 IDENVLRSLTLLVDSHEQSPT 101 (135)
Q Consensus 81 ~~~~VLR~l~vk~~~~~~~~~ 101 (135)
++++|||||+||+++....++
T Consensus 81 ~~~~VlR~l~vk~~e~~~~~~ 101 (101)
T 1cqm_A 81 IRDNVRRVMVVKSQEPFLANA 101 (101)
T ss_dssp TSTTEEEEEEEECSSCCC---
T ss_pred CCCCEEEEEEEEECCCCCCCC
T ss_conf 876847899998066667899