HHsearch results for GI: 254780329 and protein with PDBid: 1cqm_A

>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=99.97  E-value=4e-31  Score=201.75  Aligned_cols=101  Identities=24%  Similarity=0.451  Sum_probs=98.1

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCHHHHHHHHHHHC
Q ss_conf             98705999987899999999999999999985697899970368653530322241899999998089779999999808
Q gi|254780329|r    1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKMR   80 (135)
Q Consensus         1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~lk   80 (135)
                      ||+||+++|++|++++++++++++++.++|+++||+|.++++||+|+|||||+|+++|+|++++|+++|+.+.+|++.|+
T Consensus         1 Mr~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~~G~r~LAY~Ikk~~~G~Y~~~~f~~~~~~i~el~~~l~   80 (101)
T 1cqm_A            1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR   80 (101)
T ss_dssp             CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEECCCCCEEEEEEEEEEECHHHHHHHHHHHC
T ss_conf             98623999988999989999999999999876898899986122012752337667899999999979999999999856


Q ss_pred             CCCHHEEEEEEEECCCCCCCC
Q ss_conf             980210011244113455643
Q gi|254780329|r   81 IDENVLRSLTLLVDSHEQSPT  101 (135)
Q Consensus        81 ~~~~VLR~l~vk~~~~~~~~~  101 (135)
                      ++++|||||+||+++....++
T Consensus        81 ~~~~VlR~l~vk~~e~~~~~~  101 (101)
T 1cqm_A           81 IRDNVRRVMVVKSQEPFLANA  101 (101)
T ss_dssp             TSTTEEEEEEEECSSCCC---
T ss_pred             CCCCEEEEEEEEECCCCCCCC
T ss_conf             876847899998066667899