Query gi|254780329|ref|YP_003064742.1| 30S ribosomal protein S6 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 135
No_of_seqs 117 out of 1182
Neff 6.9
Searched_HMMs 23785
Date Mon May 30 08:20:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780329.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i1m_F 30S ribosomal protein S 100.0 7.8E-33 3.3E-37 211.7 4.7 109 1-110 1-109 (135)
2 1cqm_A Ribosomal protein S6; a 100.0 4E-31 1.7E-35 201.7 10.9 101 1-101 1-101 (101)
3 1vmb_A 30S ribosomal protein S 100.0 2.2E-31 9.1E-36 203.3 7.1 102 1-102 18-120 (140)
4 2j5a_A 30S ribosomal protein S 100.0 3E-30 1.3E-34 196.6 9.9 101 1-101 7-108 (110)
5 3ofo_F 30S ribosomal protein S 100.0 7.1E-31 3E-35 200.3 2.5 100 1-101 1-100 (100)
6 3bbn_F Ribosomal protein S6; s 100.0 1.2E-29 5.1E-34 193.1 5.3 97 1-97 62-167 (168)
7 2kjw_A TS9, 30S ribosomal prot 99.6 4.6E-16 1.9E-20 113.4 4.0 54 1-54 43-96 (96)
8 2kjw_A TS9, 30S ribosomal prot 77.4 0.51 2.2E-05 25.2 0.7 40 56-95 3-42 (96)
9 2vxh_A Chlorite dismutase; hem 47.5 14 0.00061 16.7 5.8 77 6-91 28-108 (251)
10 2dgb_A Hypothetical protein PU 25.6 33 0.0014 14.6 7.7 71 1-90 1-77 (84)
11 1t4a_A PURS; tetramer, complex 24.7 35 0.0015 14.5 5.3 76 1-96 1-81 (84)
12 3nn1_A Chlorite dismutase; fer 21.0 41 0.0017 14.0 6.0 77 6-91 20-100 (241)
13 1vq3_A Phosphoribosylformylgly 20.7 42 0.0018 14.0 9.1 72 1-90 13-91 (94)
No 1
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ...
Probab=99.97 E-value=7.8e-33 Score=211.75 Aligned_cols=109 Identities=29% Similarity=0.544 Sum_probs=102.9
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCHHHHHHHHHHHC
Q ss_conf 98705999987899999999999999999985697899970368653530322241899999998089779999999808
Q gi|254780329|r 1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKMR 80 (135)
Q Consensus 1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~lk 80 (135)
||+||+|||++|++++ ++..+++++.++|+++||+|.++++||+|+|||+|+|+++|+|++|+|.++|+.|++|++.|+
T Consensus 1 Mr~YE~~~Il~p~~~e-~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~K~~~G~Y~~~~f~~~~~~i~el~~~lk 79 (135)
T 3i1m_F 1 MRHYEIVFMVHPDQSE-QVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFR 79 (135)
T ss_dssp CCEECBEEEECSTTTT-SHHHHHHHHHHHHHHTTCEECCCEEEEEECCSSCTTSSSCEEEEECCEECCTTHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCHH-HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCCCCCEEEEEEEEEEECHHHHHHHHHHHC
T ss_conf 9863399996888078-999999999999986898899975023421001135789899999999849999999999965
Q ss_pred CCCHHEEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 980210011244113455643576532121
Q gi|254780329|r 81 IDENVLRSLTLLVDSHEQSPTLTIQRHDRD 110 (135)
Q Consensus 81 ~~~~VLR~l~vk~~~~~~~~~~~~~~~~~~ 110 (135)
++++|||||+||+++....++++.+.....
T Consensus 80 ~~~~VLR~l~vk~~e~~~~~~~~~~~~~e~ 109 (135)
T 3i1m_F 80 FNDAVIRSMVMRTKHAVTEASPMVKAKDER 109 (135)
T ss_dssp HCSSEESCCBCCCSSCCCSCC---------
T ss_pred CCCCEEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 660400678998425666757544200110
No 2
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=99.97 E-value=4e-31 Score=201.75 Aligned_cols=101 Identities=24% Similarity=0.451 Sum_probs=98.1
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCHHHHHHHHHHHC
Q ss_conf 98705999987899999999999999999985697899970368653530322241899999998089779999999808
Q gi|254780329|r 1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKMR 80 (135)
Q Consensus 1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~lk 80 (135)
||+||+++|++|++++++++++++++.++|+++||+|.++++||+|+|||||+|+++|+|++++|+++|+.+.+|++.|+
T Consensus 1 Mr~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~~G~r~LAY~Ikk~~~G~Y~~~~f~~~~~~i~el~~~l~ 80 (101)
T 1cqm_A 1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR 80 (101)
T ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEECCCCCEEEEEEEEEEECHHHHHHHHHHHC
T ss_conf 98623999988999989999999999999876898899986122012752337667899999999979999999999856
Q ss_pred CCCHHEEEEEEEECCCCCCCC
Q ss_conf 980210011244113455643
Q gi|254780329|r 81 IDENVLRSLTLLVDSHEQSPT 101 (135)
Q Consensus 81 ~~~~VLR~l~vk~~~~~~~~~ 101 (135)
++++|||||+||+++....++
T Consensus 81 ~~~~VlR~l~vk~~e~~~~~~ 101 (101)
T 1cqm_A 81 IRDNVRRVMVVKSQEPFLANA 101 (101)
T ss_dssp TSTTEEEEEEEECSSCCC---
T ss_pred CCCCEEEEEEEEECCCCCCCC
T ss_conf 876847899998066667899
No 3
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=99.97 E-value=2.2e-31 Score=203.30 Aligned_cols=102 Identities=20% Similarity=0.419 Sum_probs=95.9
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCHHHHHHHHHHH
Q ss_conf 987059999878999999999999999999856-9789997036865353032224189999999808977999999980
Q gi|254780329|r 1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQEN-GGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKM 79 (135)
Q Consensus 1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~-gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~l 79 (135)
||+||+|||++|+++++++..+++++.++|+++ ||+|.++++||+|+|||||+|+++|+|++++|+++|+.+++|++.|
T Consensus 18 ~R~YE~~~Il~p~l~e~~~~~~~~~i~~~I~~~~gG~I~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~l 97 (140)
T 1vmb_A 18 ERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYTVIYFRCDGQNLQELENFY 97 (140)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSTHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHH
T ss_conf 33011999988999989999999999999975599889986612440124415779889999999347803799999986
Q ss_pred CCCCHHEEEEEEEECCCCCCCCH
Q ss_conf 89802100112441134556435
Q gi|254780329|r 80 RIDENVLRSLTLLVDSHEQSPTL 102 (135)
Q Consensus 80 k~~~~VLR~l~vk~~~~~~~~~~ 102 (135)
++|++||||||||+++....+..
T Consensus 98 kl~~~VLR~l~vk~~~~~~~~~~ 120 (140)
T 1vmb_A 98 RVTPEIIRWQTFRRFDLEKKERK 120 (140)
T ss_dssp HTCTTEEEEEEEECHHHHHHHHH
T ss_pred CCCCCEEEEEEEEECCCCCCCCH
T ss_conf 36758258999970355545031
No 4
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=99.96 E-value=3e-30 Score=196.60 Aligned_cols=101 Identities=29% Similarity=0.578 Sum_probs=96.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECC-HHHHHHHHHHH
Q ss_conf 98705999987899999999999999999985697899970368653530322241899999998089-77999999980
Q gi|254780329|r 1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASP-PAAIHEMKRKM 79 (135)
Q Consensus 1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~-~~~i~el~~~l 79 (135)
||+||++||++|+++++++.++++++.++|+++||+|.++++||+|+|||||+|+++|+|++++|+++ |+.+++|++.|
T Consensus 7 M~~YE~~~il~p~l~~~~~~~~~~~i~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~~i~el~~~l 86 (110)
T 2j5a_A 7 LRYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQL 86 (110)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHHHH
T ss_conf 57101999988999989999999999999997898899985121103452346466689999999968788999999986
Q ss_pred CCCCHHEEEEEEEECCCCCCCC
Q ss_conf 8980210011244113455643
Q gi|254780329|r 80 RIDENVLRSLTLLVDSHEQSPT 101 (135)
Q Consensus 80 k~~~~VLR~l~vk~~~~~~~~~ 101 (135)
++|++|||||+||+++....++
T Consensus 87 ~l~~~VlR~l~vk~~~~~~~~~ 108 (110)
T 2j5a_A 87 KIDEDVIRWLNIQIKESEVKKN 108 (110)
T ss_dssp HHCTTEEEEEEEEECGGGCCCC
T ss_pred CCCCCEEEEEEEEECCCCCCCC
T ss_conf 6787826789999845455778
No 5
>3ofo_F 30S ribosomal protein S6; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_F* 3iy8_F 2wwl_F 3ofp_F 2gy9_F 2gyb_F
Probab=99.96 E-value=7.1e-31 Score=200.25 Aligned_cols=100 Identities=31% Similarity=0.571 Sum_probs=96.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCHHHHHHHHHHHC
Q ss_conf 98705999987899999999999999999985697899970368653530322241899999998089779999999808
Q gi|254780329|r 1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKMR 80 (135)
Q Consensus 1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~lk 80 (135)
||+||++||++|++++ +++++++++.+.|+++||+|.++++||+|+|||||+|+++|+|++++|+++|+.+++|++.|+
T Consensus 1 M~~YE~~~Il~p~~~e-~~~~~~~~~~~~i~~~gg~i~~~e~~G~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~l~ 79 (100)
T 3ofo_F 1 MRHYEIVFMVHPDQSE-QVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFR 79 (100)
T ss_dssp CCEECBCCEECGGGGG-GHHHHHHHHHHHHTTTTCEESCCEEEEEECCSSCTTSSSCEEEEECCEECCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCHH-HHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHCCCCCCCEEEEEEEEEEECHHHHHHHHHHHC
T ss_conf 9852499997888068-999999999999986898899986113421102045367899999999859999999999856
Q ss_pred CCCHHEEEEEEEECCCCCCCC
Q ss_conf 980210011244113455643
Q gi|254780329|r 81 IDENVLRSLTLLVDSHEQSPT 101 (135)
Q Consensus 81 ~~~~VLR~l~vk~~~~~~~~~ 101 (135)
+|++|||||+||+++..+++|
T Consensus 80 ~~~~VlR~l~vk~~~~~~e~S 100 (100)
T 3ofo_F 80 FNDAVIRSMVMRTKHAVTEAS 100 (100)
T ss_dssp HCSSEESCCBCCCSSCCCSCC
T ss_pred CCCCEEEEEEEEECCCCCCCC
T ss_conf 775826899998356777898
No 6
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.95 E-value=1.2e-29 Score=193.05 Aligned_cols=97 Identities=21% Similarity=0.428 Sum_probs=93.2
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCC---------CEEEEEEEEEECCHHH
Q ss_conf 9870599998789999999999999999998569789997036865353032224---------1899999998089779
Q gi|254780329|r 1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKN---------RKAYYVFMNIASPPAA 71 (135)
Q Consensus 1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~---------~~G~Y~~~~f~~~~~~ 71 (135)
||.||+|||++|++++++++++++++.++|+++||+|+.+++||+|+|||+|+|+ .+|+|++|+|+++|+.
T Consensus 62 Mr~YE~~~Il~P~lseeei~~li~~i~~~I~k~GG~I~~~e~wG~RkLAY~IkK~~~a~~~~~~~~G~Yv~i~F~~~p~~ 141 (168)
T 3bbn_F 62 LRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPES 141 (168)
T ss_dssp CEEEEEEEEECTTSCHHHHHSTTHHHHHHHTTTSCEEEEEEEEEECCCSSCTTSCSSSCSSCCCCCCEEEEEEEEECTTS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECHHH
T ss_conf 67010999988989989999999999999986898899875122202320233222001002413789999999839999
Q ss_pred HHHHHHHHCCCCHHEEEEEEEECCCC
Q ss_conf 99999980898021001124411345
Q gi|254780329|r 72 IHEMKRKMRIDENVLRSLTLLVDSHE 97 (135)
Q Consensus 72 i~el~~~lk~~~~VLR~l~vk~~~~~ 97 (135)
|.+|++.|++|++|||||+||+++..
T Consensus 142 I~eLe~~Lr~ne~VLR~l~vKldkkk 167 (168)
T 3bbn_F 142 ISPLEAALVTDDDVIRSSSFKIRKRK 167 (168)
T ss_dssp SHHHHHHHHTSSCCSEEECCBCCSCC
T ss_pred HHHHHHHHCCCCCCEEEEEEEECCCC
T ss_conf 99999996477670478899834744
No 7
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=99.59 E-value=4.6e-16 Score=113.44 Aligned_cols=54 Identities=30% Similarity=0.426 Sum_probs=53.0
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCC
Q ss_conf 987059999878999999999999999999856978999703686535303222
Q gi|254780329|r 1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRK 54 (135)
Q Consensus 1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k 54 (135)
|++||++||++|+++++++.++++++.++|+++||+|.+++.||+|+|||||+|
T Consensus 43 ~~KYEl~~Il~PdLseeei~~lie~i~~iIt~~GG~I~~~e~WGkRkLAYpIkK 96 (96)
T 2kjw_A 43 PGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAK 96 (96)
T ss_dssp SSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCSCCEECCCCCCCCSCCC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf 876059999799999899999999999999868988988852104024560479
No 8
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=77.44 E-value=0.51 Score=25.20 Aligned_cols=40 Identities=20% Similarity=0.581 Sum_probs=35.9
Q ss_pred CEEEEEEEEEECCHHHHHHHHHHHCCCCHHEEEEEEEECC
Q ss_conf 1899999998089779999999808980210011244113
Q gi|254780329|r 56 RKAYYVFMNIASPPAAIHEMKRKMRIDENVLRSLTLLVDS 95 (135)
Q Consensus 56 ~~G~Y~~~~f~~~~~~i~el~~~lk~~~~VLR~l~vk~~~ 95 (135)
.+|+|.+++++++....+.+-|.|+.-+++-|.+.+--..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~r~~~~r~~~~~~~~~a~t~ 42 (96)
T 2kjw_A 3 PQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTT 42 (96)
T ss_dssp TSCCCEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSS
T ss_pred CCEEEEEEEEECCCCCCCCCHHHHHHHHHHEEEEEEECCC
T ss_conf 7505899994366011562227777644122688750577
No 9
>2vxh_A Chlorite dismutase; heme-based enzyme, azospira oryzae strain GR-1, oxidoreductase, chlorate respiration, molecular oxygen production; HET: HEM; 2.1A {Azospira oryzae} PDB: 3m2s_A* 3m2q_A*
Probab=47.46 E-value=14 Score=16.69 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=56.1
Q ss_pred EEEEECCC---CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCC-EEEEEEEEEECCHHHHHHHHHHHCC
Q ss_conf 99998789---9999999999999999985697899970368653530322241-8999999980897799999998089
Q gi|254780329|r 6 HVFLLRQD---ISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNR-KAYYVFMNIASPPAAIHEMKRKMRI 81 (135)
Q Consensus 6 ~~~i~~p~---~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~-~G~Y~~~~f~~~~~~i~el~~~lk~ 81 (135)
.+|=++|. ++.++....++++.++|.+..+.+.. -.|.+..++ .|.+.++.+.-+++.+.++.+.|+.
T Consensus 28 ~~fk~d~~Wr~l~~~eR~~~~~E~~~~l~~~~~~~~~--------~~Y~~~G~r~daDlm~w~~~~~~~~Lq~~~~~~~~ 99 (251)
T 2vxh_A 28 TMFKLRPDWNKVPAMERKGAAEEVKKLIEKHKDNVLV--------DLYLTRGLETNSDFFFRINAYDLAKAQTFMREFRS 99 (251)
T ss_dssp EEEEECGGGTTSCHHHHHTHHHHHHHHHHHTTTTCEE--------EEEECTTTCSSCSEEEEEEESSHHHHHHHHHHHHT
T ss_pred EEEEECHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEE--------EEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 9999764441199999999999999999753688559--------99998741376458999838999999999999974
Q ss_pred CCHHEEEEEE
Q ss_conf 8021001124
Q gi|254780329|r 82 DENVLRSLTL 91 (135)
Q Consensus 82 ~~~VLR~l~v 91 (135)
.. +-+++..
T Consensus 100 t~-lg~~l~~ 108 (251)
T 2vxh_A 100 TT-IGKNADV 108 (251)
T ss_dssp ST-TGGGEEE
T ss_pred CC-CCCCCCC
T ss_conf 44-7553300
No 10
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=25.57 E-value=33 Score=14.56 Aligned_cols=71 Identities=11% Similarity=0.160 Sum_probs=43.7
Q ss_pred CCCCEEEEEE--CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCH-HHHHHHHH
Q ss_conf 9870599998--78999999999999999999856978999703686535303222418999999980897-79999999
Q gi|254780329|r 1 MKLYEHVFLL--RQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPP-AAIHEMKR 77 (135)
Q Consensus 1 M~~YE~~~i~--~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~-~~i~el~~ 77 (135)
|+.|-.-+.+ +|.+-+.+-..+.. .+ .+|.|.+++-+.|-|+.+.++++. +...+..+
T Consensus 1 M~~ykv~V~V~lK~gVlDPqG~aI~~----aL---------------~~lG~~v~~vr~GK~iel~i~~~~~e~a~~~~~ 61 (84)
T 2dgb_A 1 MPRYQATLLIELKKGILDPQGRAVEG----VL---------------KDLGHPVEEVRVGKVLEIVFPAENLLEAEEKAK 61 (84)
T ss_dssp -CEEEEEEEEEECTTSCCHHHHHHHH----HH---------------HHTTCCCSEEEEEEEEEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEEEEEECCCCCCCHHHHHHH----HH---------------HHCCCCCCEEEEEEEEEEEECCCCHHHHHHHHH
T ss_conf 99579999999799772817999999----99---------------975998543897669999985899899999999
Q ss_pred ---HHCCCCHHEEEEE
Q ss_conf ---8089802100112
Q gi|254780329|r 78 ---KMRIDENVLRSLT 90 (135)
Q Consensus 78 ---~lk~~~~VLR~l~ 90 (135)
.|--|+-|=.|-+
T Consensus 62 ~~~klLaNpvIE~y~i 77 (84)
T 2dgb_A 62 AMGALLANPVMEVYAL 77 (84)
T ss_dssp HHHHHHSCTTTEEEEE
T ss_pred HHHHHCCCCCEEEEEE
T ss_conf 9988749973478999
No 11
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, FGAM, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=24.66 E-value=35 Score=14.46 Aligned_cols=76 Identities=16% Similarity=0.234 Sum_probs=50.1
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCE-ECCCCCEEEEEEEEEECCHH----HHHHH
Q ss_conf 98705999987899999999999999999985697899970368653530-32224189999999808977----99999
Q gi|254780329|r 1 MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAY-RIRKNRKAYYVFMNIASPPA----AIHEM 75 (135)
Q Consensus 1 M~~YE~~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY-~I~k~~~G~Y~~~~f~~~~~----~i~el 75 (135)
|=+-++.+-++|.+.+.+...+. ..+.. |.| .+++-+.|-|+.+.++++.+ .+.++
T Consensus 1 m~k~~V~V~lK~gVlDPqG~aI~----~aL~~---------------lG~~~v~~vr~gK~~~l~i~~~~~~a~~~v~~~ 61 (84)
T 1t4a_A 1 MYKVKVYVSLKESVLDPQGSAVQ----HALHS---------------MTYNEVQDVRIGKYMELTIEKSDRDLDVLVKEM 61 (84)
T ss_dssp CEEEEEEEEECTTSCCHHHHHHH----HHHHH---------------TTCTTEEEEEEEEEEEEEECCCSSCHHHHHHHH
T ss_pred CEEEEEEEEECCCCCCCHHHHHH----HHHHH---------------CCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHH
T ss_conf 95999999989987172799999----99986---------------497566346888799999769859999999999
Q ss_pred HHHHCCCCHHEEEEEEEECCC
Q ss_conf 998089802100112441134
Q gi|254780329|r 76 KRKMRIDENVLRSLTLLVDSH 96 (135)
Q Consensus 76 ~~~lk~~~~VLR~l~vk~~~~ 96 (135)
-..|--|+ |+-.-.+++.+.
T Consensus 62 c~~lLaNp-vIE~y~i~i~ei 81 (84)
T 1t4a_A 62 CEKLLANT-VIEDYRYEVEEV 81 (84)
T ss_dssp HHHTTCCT-TTEEEEEEEEC-
T ss_pred HHHHCCCC-CEEEEEEEEEEE
T ss_conf 99865975-526899999997
No 12
>3nn1_A Chlorite dismutase; ferredoxin like fold, chlorite dismutation, periplasmatic, oxidoreductase; HET: HEM; 1.85A {Candidatus nitrospira defluvii} PDB: 3nn2_A* 3nn4_A* 3nn3_A*
Probab=21.03 E-value=41 Score=14.03 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=56.6
Q ss_pred EEEEECC---CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCC-CEEEEEEEEEECCHHHHHHHHHHHCC
Q ss_conf 9999878---9999999999999999998569789997036865353032224-18999999980897799999998089
Q gi|254780329|r 6 HVFLLRQ---DISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKN-RKAYYVFMNIASPPAAIHEMKRKMRI 81 (135)
Q Consensus 6 ~~~i~~p---~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~-~~G~Y~~~~f~~~~~~i~el~~~lk~ 81 (135)
.+|=++| .++.++....++++..+|.+..|.+.. -.|.+... ..|.+.++.+.-+++.+.++.+.|+.
T Consensus 20 ~~fk~dp~Wr~l~~~er~~~~~e~~~~l~~~~~~~~~--------~~Y~~~Glr~~aDlm~w~~~~~~~~lq~~~~~l~~ 91 (241)
T 3nn1_A 20 ATFQMDHDWWDLPGESRVISVAEVKGLVEQWSGKILV--------ESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMG 91 (241)
T ss_dssp EEEEECGGGGGSCHHHHHHHHHHHHHHHHHHTTTCEE--------EEEECTTTSTTCCEEEEEEESSHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHCCHHHHHHHHHHHHHHHHHHCCCCEE--------EEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 9999760220189999999999999999872677348--------99999742577768999958999999999999974
Q ss_pred CCHHEEEEEE
Q ss_conf 8021001124
Q gi|254780329|r 82 DENVLRSLTL 91 (135)
Q Consensus 82 ~~~VLR~l~v 91 (135)
.. +-+++..
T Consensus 92 t~-lg~~l~~ 100 (241)
T 3nn1_A 92 TR-LGRHLTS 100 (241)
T ss_dssp ST-TGGGEEE
T ss_pred CC-CCCCCCC
T ss_conf 63-6554521
No 13
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS subunit; TM1244, PURS subunit (EC 6.3.5.3), structural genomics; 1.90A {Thermotoga maritima MSB8} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=20.72 E-value=42 Score=13.99 Aligned_cols=72 Identities=10% Similarity=0.191 Sum_probs=48.7
Q ss_pred CCCCEE--EEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCEEEEEEEEEECCH-----HHHH
Q ss_conf 987059--999878999999999999999999856978999703686535303222418999999980897-----7999
Q gi|254780329|r 1 MKLYEH--VFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYVFMNIASPP-----AAIH 73 (135)
Q Consensus 1 M~~YE~--~~i~~p~~~~~~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~-----~~i~ 73 (135)
|+.|.. .+.++|.+.+.+-..+.. .+...|.. .+++-+.|.|+.+.++++. +.+.
T Consensus 13 m~~~k~~V~V~lK~gVlDPqG~aV~~----aL~~lG~~--------------~v~~VrvGK~i~l~i~~~~~e~a~~~v~ 74 (94)
T 1vq3_A 13 LPLFKFAIDVQYRSNVRDPRGETIER----VLREEKGL--------------PVKKLRLGKSIHLEVEAENKEKAYEIVK 74 (94)
T ss_dssp CCEEEEEEEEEECTTSCCHHHHHHHH----HHHHTTCC--------------CEEEEEEEEEEEEEEECSSHHHHHHHHH
T ss_pred CEEEEEEEEEEECCCCCCHHHHHHHH----HHHHCCCC--------------CCCEEEEEEEEEEEECCCCHHHHHHHHH
T ss_conf 23279999999789871848999999----99971876--------------6661887889999990799799999999
Q ss_pred HHHHHHCCCCHHEEEEE
Q ss_conf 99998089802100112
Q gi|254780329|r 74 EMKRKMRIDENVLRSLT 90 (135)
Q Consensus 74 el~~~lk~~~~VLR~l~ 90 (135)
++-..|--|+-|=.|-+
T Consensus 75 ~ic~~LLaNpVIE~y~i 91 (94)
T 1vq3_A 75 KACEELLVNPVVEEYEV 91 (94)
T ss_dssp HHHHHTTSCTTTEEEEE
T ss_pred HHHHHHCCCCCEEEEEE
T ss_conf 99998648866348999
Done!