RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780329|ref|YP_003064742.1| 30S ribosomal protein S6
[Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)



>gnl|CDD|179034 PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.
          Length = 108

 Score =  121 bits (305), Expect = 8e-29
 Identities = 46/100 (46%), Positives = 69/100 (69%)

Query: 1   MKLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYY 60
           M+ YE VF+LR D+S +Q+K  + +++ +I ENGG +  V + G R +AY I K RK +Y
Sbjct: 1   MRKYEIVFILRPDLSEEQVKALVERFKGVITENGGTIHKVEDWGRRRLAYPINKLRKGHY 60

Query: 61  VFMNIASPPAAIHEMKRKMRIDENVLRSLTLLVDSHEQSP 100
           V +N  +PPAAI E++R  RI+E+VLR LT+ V+  E+ P
Sbjct: 61  VLLNFEAPPAAIAELERLFRINEDVLRFLTVKVEEAEEEP 100


>gnl|CDD|129270 TIGR00166, S6, ribosomal protein S6.  MRP17 protein is a
          component of the small ribosomal subunit in
          mitochondria, and is shown here to be an ortholog of
          S6.
          Length = 93

 Score = 77.8 bits (192), Expect = 8e-16
 Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 2  KLYEHVFLLRQDISSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKAYYV 61
          + YE +FL+R  +S +  K  I +Y+ +I  NG E+    + G R +AY I+K  +A+YV
Sbjct: 1  RHYEIIFLVRPTLSEEV-KGQIERYKKVITLNGAEIVRSEDWGKRRLAYPIKKQLRAHYV 59

Query: 62 FMNIASPPAAIHEMKRKMRIDENVLRSLTLLVDS 95
           MN +     I E +R  RI++NV+RSL + ++ 
Sbjct: 60 LMNFSGEAQVIKEFERTARINDNVIRSLIIKLEH 93


>gnl|CDD|172564 PRK14074, rpsF, 30S ribosomal protein S6; Provisional.
          Length = 257

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 44  GMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKMRIDENVLRSLTLLVD 94
           G+   AY I K +  +Y  M I+S  + + E  R+M+++EN++R L++ VD
Sbjct: 188 GLLDFAYPINKMKSGHYCIMCISSTSSIMDEFVRRMKLNENIIRHLSVQVD 238


>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
          Length = 492

 Score = 28.7 bits (65), Expect = 0.50
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 20/89 (22%)

Query: 22  TIGQYQSLIQENGGEVRL-VNELGMRTIAYRIRKNRKAYYVFMNIASPPAAIHEMKRKMR 80
            IGQ+  ++++ GG   L V+E        ++R            A     + E+ RK+ 
Sbjct: 318 RIGQF--ILEQPGGTAYLIVDEALFEEARAQLRPQIDG---RTPGAWKAETVEELARKLG 372

Query: 81  IDENVLRSLTLLVDSHEQSPTLTIQRHDR 109
           I    L++              T+  ++R
Sbjct: 373 IPPGGLQA--------------TVDAYNR 387


>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated.
          Length = 256

 Score = 25.5 bits (56), Expect = 4.2
 Identities = 3/18 (16%), Positives = 7/18 (38%)

Query: 59  YYVFMNIASPPAAIHEMK 76
             V  +  + P  +  +K
Sbjct: 191 MKVSQSNGTSPEQVQMLK 208


>gnl|CDD|183556 PRK12493, PRK12493, magnesium chelatase subunit H; Provisional.
          Length = 1310

 Score = 25.3 bits (56), Expect = 5.2
 Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 17  QQIKDTIGQYQSLIQENGGEVRLVNEL 43
           +++ + IG YQ L  ++G  +++VN +
Sbjct: 669 RELSELIGSYQQL-PDSGRGIQIVNTI 694


>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated.
          Length = 390

 Score = 25.1 bits (55), Expect = 6.6
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 15  SSQQIKDTIGQYQSLIQENGGEVRLVNELGMRTIAYRIRKNRKA--------YYVFMNIA 66
           +++ IK  +G   +L     G + L N L M+    ++R N +         Y  F  I 
Sbjct: 213 ATETIKIILGAGNTL----SGRLLLYNALDMKFRELKLRPNPERPVIEKLIDYEQFCGI- 267

Query: 67  SPPAAIHEMKRKMRIDENVLRSLTLLVDS 95
            P A   E  +K  I E  +  L  L+DS
Sbjct: 268 -PQAKAAEAAQKAEIPEMTVTELKALLDS 295


>gnl|CDD|185543 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional.
          Length = 504

 Score = 24.9 bits (55), Expect = 7.2
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 47  TIAYRIRKNRKAYYVFM-NIASPPAAIHEMKRKMRI 81
           T+ Y++  N    Y    +IA   A +  ++  M +
Sbjct: 291 TVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGL 326


>gnl|CDD|178465 PLN02877, PLN02877, alpha-amylase/limit dextrinase.
          Length = 970

 Score = 24.7 bits (54), Expect = 7.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 73  HEMKRKMRIDENVLRSLTLLVD 94
           H MKR M   ++ L+SLTL  D
Sbjct: 563 HLMKRTMVRAKDALQSLTLERD 584


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0755    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,175,099
Number of extensions: 126764
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 20
Length of query: 135
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 52
Effective length of database: 4,201,009
Effective search space: 218452468
Effective search space used: 218452468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)