HHsearch alignment for GI: 254780330 and conserved domain: CHL00077
>CHL00077 rps18 ribosomal protein S18.
Probab=99.94 E-value=3.5e-27 Score=173.40 Aligned_cols=78 Identities=40% Similarity=0.727 Sum_probs=65.1
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 76667132277777888854350388511446889999962899848550331748999999999999999704658676
Q gi|254780330|r 3 EVAPTPLLRRNVSHRRKSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARYLGLIAYVN 82 (83)
Q Consensus 3 ~~~p~p~~~~~~~~~~k~c~~~~~~~~~iDYKn~~lL~~Fis~~GkI~prr~TG~~~k~Qr~i~~aIKrAR~~gLlPy~~ 82 (83)
T Consensus 2 ~~~k~~~~k~~r~~rrk~~~~--~~~~~IDYKnv~lL~~Fise~GKIlprR~Tg~~ak~QR~l~kAIKrAR~lgLLPyv~ 79 (86)
T CHL00077 2 DKSKRPFRKSKRSFRRRLPPI--QSGDRIDYKNMSLLSRFISEQGKILSRRVNRLTLKQQRLITKAIKQARILSLLPFLN 79 (86)
T ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEC
T ss_conf 744466554566656679999--988867766889999875888828085207879999999999999999963478001