HHsearch alignment for GI: 254780330 and conserved domain: COG0238
>COG0238 RpsR Ribosomal protein S18 [Translation, ribosomal structure and biogenesis].
Probab=99.93 E-value=9e-27 Score=171.10 Aligned_cols=68 Identities=56% Similarity=0.932 Sum_probs=64.4
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCHHHCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 27777788885435038851144688999996289984855033174899999999999999970465
Q gi|254780330|r 11 RRNVSHRRKSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARYLGLI 78 (83)
Q Consensus 11 ~~~~~~~~k~c~~~~~~~~~iDYKn~~lL~~Fis~~GkI~prr~TG~~~k~Qr~i~~aIKrAR~~gLl 78 (83)
T Consensus 8 r~~~~rrrk~c~f~~~~~~~iDYKd~~~Lkrfise~GKI~prRiTG~sak~QR~la~AIKRAR~laLl 75 (75)
T COG0238 8 RAPFFRRRKVCRFTAEGIEEIDYKDVELLKRFISERGKILPRRITGTSAKHQRRLARAIKRARYLALL 75 (75)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 04334446436565024884672489999998562676565412352399999999999999998609