HHsearch alignment of GI: 254780330 and MMDB domain: 2vqe_R_

>2vqe_R (R:) 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus}

Probab=99.95  E-value=1.3e-28  Score=181.10  Aligned_cols=79  Identities=37%  Similarity=0.526  Sum_probs=72.8

Q ss_pred             CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             6667132277777888854350388511446889999962899848550331748999999999999999704658676
Q gi|254780330|r    4 VAPTPLLRRNVSHRRKSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARYLGLIAYVN   82 (83)
Q Consensus         4 ~~p~p~~~~~~~~~~k~c~~~~~~~~~iDYKn~~lL~~Fis~~GkI~prr~TG~~~k~Qr~i~~aIKrAR~~gLlPy~~   82 (83)
                      ..+.+...+....+++.|+||.++++.|||||+++|++|||++|+|+||++||+|++|||+|++|||+||+||||||+.
T Consensus         5 ~~~~~~~~~~~~~~~~~c~~~~~~~~~idykn~~lL~~Fis~~GkIlprr~TGl~~k~Qr~l~~aIkrAR~~gLlP~~~   83 (88)
T 2vqe_R            5 NAKPKKEAQRRPSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFTE   83 (88)
T ss_dssp             -----------CCCSCCTTTSCCCEETTCTTCHHHHGGGBCSSSCBCCHHHHCCCHHHHHHHHHHHHHHHHTTSSCSCC
T ss_pred             CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             6464412320887776663333666866765889999876998858177458878999999999999999975453229