RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780330|ref|YP_003064743.1| 30S ribosomal protein S18
[Candidatus Liberibacter asiaticus str. psy62]
         (83 letters)



>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli
          [TaxId: 562]}
          Length = 55

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query: 31 IDYKDIRLLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARYLGLIAYVN 82
          IDYKDI  L  ++++ GKIVPSRI+    K QR+LA+AIKRARYL L+ Y +
Sbjct: 2  IDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTD 53


>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus
          thermophilus [TaxId: 274]}
          Length = 70

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query: 18 RKSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARYLGL 77
          +     +       DY+++ +L RFLS+ GKI+P R + +S K+QR LAK IKRAR LGL
Sbjct: 1  KAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGL 60

Query: 78 IAYVN 82
          + +  
Sbjct: 61 LPFTE 65


>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus
          solfataricus [TaxId: 2287]}
          Length = 415

 Score = 25.7 bits (55), Expect = 1.2
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 38 LLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARYLGLIAYV 81
          L      +R  ++P +   ++       +  IK   Y G  A V
Sbjct: 9  LYYWEHRKRNWLIPLKEEILAKSSNIRTSALIKGKGYKG--AVV 50


>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
           scrofa), cytosolic form [TaxId: 9823]}
          Length = 412

 Score = 24.1 bits (51), Expect = 3.2
 Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 49  IVP-SRIS--SVSHKKQRELAKAIKRA 72
           ++P  RI+   ++ K    +A +I  A
Sbjct: 381 LLPSGRINMCGLTTKNLDYVATSIHEA 407


>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1449

 Score = 23.3 bits (49), Expect = 5.8
 Identities = 4/21 (19%), Positives = 12/21 (57%)

Query: 31   IDYKDIRLLNRFLSQRGKIVP 51
            ++Y+ + LL   ++ +G +  
Sbjct: 1362 VNYRHMALLVDVMTTQGGLTS 1382


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 299,890
Number of extensions: 11464
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 7
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (21.9 bits)