BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780330|ref|YP_003064743.1| 30S ribosomal protein S18
[Candidatus Liberibacter asiaticus str. psy62]
         (83 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780330|ref|YP_003064743.1| 30S ribosomal protein S18 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 83

 Score =  166 bits (420), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MAEVAPTPLLRRNVSHRRKSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHK 60
          MAEVAPTPLLRRNVSHRRKSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHK
Sbjct: 1  MAEVAPTPLLRRNVSHRRKSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHK 60

Query: 61 KQRELAKAIKRARYLGLIAYVNL 83
          KQRELAKAIKRARYLGLIAYVNL
Sbjct: 61 KQRELAKAIKRARYLGLIAYVNL 83


>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 24.6 bits (52), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 33  YKDIRLLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARYLGLIAYVN 82
           Y++ RLL  F      I P  I+ ++HK   +  +A+    Y+ +  Y N
Sbjct: 94  YQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ--RAMDLLSYMDMSQYAN 141


>gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 346

 Score = 23.9 bits (50), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 27 GAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSH--KKQRELAKAIKRARY 74
          G  R+D K ++  NR  S +   +P  I++++H  K+Q+ L  ++   ++
Sbjct: 44 GQVRVDKKRVKFNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNLTKH 93


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1828

 Score = 21.9 bits (45), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 38   LLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARY 74
            +L+  LSQR   +   IS   HK+   +   I +  Y
Sbjct: 1270 ILDNILSQRSMEISDSISGAFHKEGNAVVNVIDQQIY 1306


>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1398

 Score = 20.4 bits (41), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 31   IDYKDIRLLNRFLSQRGK 48
            +D  ++  LNR L+Q+GK
Sbjct: 1275 VDRIEVEELNRSLAQQGK 1292


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.136    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,535
Number of Sequences: 1233
Number of extensions: 1761
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 83
length of database: 328,796
effective HSP length: 52
effective length of query: 31
effective length of database: 264,680
effective search space:  8205080
effective search space used:  8205080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 31 (16.5 bits)