HHsearch alignment of GI: 254780331 and MMDB domain: 1nkw_F_

>1nkw_F (F:) 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans}
Probab=100.00  E-value=9.8e-45  Score=302.16  Aligned_cols=145  Identities=37%  Similarity=0.579  Sum_probs=141.1

Q ss_pred             EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             33465201117587783888277632110143787301220146888778999998422346789999887654321000
Q gi|254780331|r   14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLI   93 (179)
Q Consensus        14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~   93 (179)
                      |+|||++|+ +||++||+|+|++|||||||||+|+|+|||++|+++++..++..+++..+..+.|+.++.+|++..+++.
T Consensus         1 M~viL~~~~-~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~   79 (146)
T 1nkw_F            1 MQVILLEPS-RLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGVAVELS   79 (146)
T ss_pred             CEEEEEECC-CCCCCCCEEEECCHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             979997447-7898899899876103354065681566699999999999999999999989999999998530244332


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEEC
Q ss_conf             2556543100341078999999860887686663026564320549999996397299999999725
Q gi|254780331|r   94 RAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARS  160 (179)
Q Consensus        94 ~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~V~V~~~  160 (179)
                      ++++ +|+||||||+.||+++|.+.|++|++++|.||+||+++|+|+|+|+||++|+++++|+|+++
T Consensus        80 ~~~~-~g~lfGsVt~~~I~~~l~~~gi~I~k~~I~l~~~Ik~~G~~~V~i~l~~~V~~~i~i~V~a~  145 (146)
T 1nkw_F           80 VRAG-EGKIYGAVTHQDVANSLDQLGFDVDRRKIDMPKTVKEVGEYDIAYRAHPEVTIPMKLVVHAA  145 (146)
T ss_pred             HCCC-CCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCHHHCCEEEEEEEEECCCEEEEEEEEEEEC
T ss_conf             0145-78655767889999999985994477566078702223888999994298799999999978