HHsearch alignment of GI: 254780331 and MMDB domain: 1nkw_F_
>1nkw_F (F:) 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans}
Probab=100.00 E-value=9.8e-45 Score=302.16 Aligned_cols=145 Identities=37% Similarity=0.579 Sum_probs=141.1
Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 33465201117587783888277632110143787301220146888778999998422346789999887654321000
Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLI 93 (179)
Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~ 93 (179)
|+|||++|+ +||++||+|+|++|||||||||+|+|+|||++|+++++..++..+++..+..+.|+.++.+|++..+++.
T Consensus 1 M~viL~~~~-~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~ 79 (146)
T 1nkw_F 1 MQVILLEPS-RLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGVAVELS 79 (146)
T ss_pred CEEEEEECC-CCCCCCCEEEECCHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 979997447-7898899899876103354065681566699999999999999999999989999999998530244332
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEEC
Q ss_conf 2556543100341078999999860887686663026564320549999996397299999999725
Q gi|254780331|r 94 RAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARS 160 (179)
Q Consensus 94 ~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~V~V~~~ 160 (179)
++++ +|+||||||+.||+++|.+.|++|++++|.||+||+++|+|+|+|+||++|+++++|+|+++
T Consensus 80 ~~~~-~g~lfGsVt~~~I~~~l~~~gi~I~k~~I~l~~~Ik~~G~~~V~i~l~~~V~~~i~i~V~a~ 145 (146)
T 1nkw_F 80 VRAG-EGKIYGAVTHQDVANSLDQLGFDVDRRKIDMPKTVKEVGEYDIAYRAHPEVTIPMKLVVHAA 145 (146)
T ss_pred HCCC-CCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCHHHCCEEEEEEEEECCCEEEEEEEEEEEC
T ss_conf 0145-78655767889999999985994477566078702223888999994298799999999978