HHsearch alignment of GI: 254780331 and MMDB domain: 2j01_I_41-148
>2j01_I (I:41-148) 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}
Probab=99.88 E-value=1.6e-23 Score=168.49 Aligned_cols=104 Identities=25% Similarity=0.398 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCHHHHCCCCC
Q ss_conf 01468887789999984223467899998876543210002556543100341078999999860-88768666302656
Q gi|254780331|r 54 KENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEE-GFDVNRGQINLKSP 132 (179)
Q Consensus 54 ~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~-gi~I~k~~I~l~~p 132 (179)
.+|++.++.++..++++.++.+++|+.++..|++..++|.+++| +|+||||||++||+++|.++ |++||+++|.||+|
T Consensus 1 k~nl~~~~~~k~~~~~~~~~~~~~a~~~a~~L~~~~i~i~~k~g-eGklFGSVt~~dIa~~l~~~~g~~Idk~~I~l~~~ 79 (106)
T 2j01_I 1 ESNLKALEARIRAQAKRLAERKAEAERLKEILENLTLTIPVRAG-ETKIYGSVTAKDIAEALSRQHGVTIDPKRLALEKP 79 (106)
T ss_dssp HHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHTTCBCCCCCCBC-SSSBSSCCCHHHHHHHHHTTTCCCCCTTTTCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHCCCEECHHHHHCCCC
T ss_conf 77899999988877543245667888888887655454442145-54330455799999999873296765646404564
Q ss_pred CCCEEEEEEEEEECCCEEEEEEEEEE
Q ss_conf 43205499999963972999999997
Q gi|254780331|r 133 IKSVGIHNIMISLHADVSTTITLNVA 158 (179)
Q Consensus 133 Ik~~G~y~V~I~L~~~V~a~i~V~V~ 158 (179)
||++|.|+|+|+||++|+|+++|+|+
T Consensus 80 IK~~G~~~v~ikLh~~V~a~i~v~Vv 105 (106)
T 2j01_I 80 IKELGEYVLTYKPHPEVPIQLKVSVV 105 (106)
T ss_dssp CCSCEEEECCCSSSSCCCCEEEECCC
T ss_pred HHHEEEEEEEEEECCCEEEEEEEEEE
T ss_conf 12029999999964987999999999