HHsearch alignment of GI: 254780331 and MMDB domain: 2j01_I_41-148

>2j01_I (I:41-148) 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}
Probab=99.88  E-value=1.6e-23  Score=168.49  Aligned_cols=104  Identities=25%  Similarity=0.398  Sum_probs=100.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCHHHHCCCCC
Q ss_conf             01468887789999984223467899998876543210002556543100341078999999860-88768666302656
Q gi|254780331|r   54 KENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEE-GFDVNRGQINLKSP  132 (179)
Q Consensus        54 ~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~-gi~I~k~~I~l~~p  132 (179)
                      .+|++.++.++..++++.++.+++|+.++..|++..++|.+++| +|+||||||++||+++|.++ |++||+++|.||+|
T Consensus         1 k~nl~~~~~~k~~~~~~~~~~~~~a~~~a~~L~~~~i~i~~k~g-eGklFGSVt~~dIa~~l~~~~g~~Idk~~I~l~~~   79 (106)
T 2j01_I            1 ESNLKALEARIRAQAKRLAERKAEAERLKEILENLTLTIPVRAG-ETKIYGSVTAKDIAEALSRQHGVTIDPKRLALEKP   79 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHTTCBCCCCCCBC-SSSBSSCCCHHHHHHHHHTTTCCCCCTTTTCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHCCCEECHHHHHCCCC
T ss_conf             77899999988877543245667888888887655454442145-54330455799999999873296765646404564


Q ss_pred             CCCEEEEEEEEEECCCEEEEEEEEEE
Q ss_conf             43205499999963972999999997
Q gi|254780331|r  133 IKSVGIHNIMISLHADVSTTITLNVA  158 (179)
Q Consensus       133 Ik~~G~y~V~I~L~~~V~a~i~V~V~  158 (179)
                      ||++|.|+|+|+||++|+|+++|+|+
T Consensus        80 IK~~G~~~v~ikLh~~V~a~i~v~Vv  105 (106)
T 2j01_I           80 IKELGEYVLTYKPHPEVPIQLKVSVV  105 (106)
T ss_dssp             CCSCEEEECCCSSSSCCCCEEEECCC
T ss_pred             HHHEEEEEEEEEECCCEEEEEEEEEE
T ss_conf             12029999999964987999999999