HHsearch alignment of GI: 254780331 and MMDB domain: 3i1n_H_

>3i1n_H (H:) 50S ribosomal protein L9; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_F 1p86_F 1vs8_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vs6_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H 2qox_H ...
Probab=100.00  E-value=1e-42  Score=289.47  Aligned_cols=147  Identities=37%  Similarity=0.635  Sum_probs=139.6

Q ss_pred             EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf             334652011175877838882776321101437873012201468887789999984223467899998876543-2100
Q gi|254780331|r   14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLEKKAKYEGISKDLAKK-NFSL   92 (179)
Q Consensus        14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~-~l~i   92 (179)
                      |+|||++||+|||++||+|+|+||||||||||+|+|+|||++|+++++..+...++......++|+.++.+|+.+ .+.|
T Consensus         1 mkVIL~~dV~~lGk~GdiV~V~~GyaRN~Lip~~~A~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~l~i   80 (149)
T 3i1n_H            1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTI   80 (149)
T ss_dssp             CCCEESSCCTTTCCSSCBCCCCHHHHTTTSSSSSSEECCCSSHHHHTTSTTTTTTTTTTTTTTTSTTSCSSCTTCCCCSS
T ss_pred             CEEEEECCCCCCCCCCCEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             97999044103798899999873355564112676233067789999988999988777777789988765400047987


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCC-CCCCCCEEEEEEEEEECCCEEEEEEEEEEEC
Q ss_conf             0255654310034107899999986088768666302-6564320549999996397299999999725
Q gi|254780331|r   93 IRAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINL-KSPIKSVGIHNIMISLHADVSTTITLNVARS  160 (179)
Q Consensus        93 ~~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l-~~pIk~~G~y~V~I~L~~~V~a~i~V~V~~~  160 (179)
                      .++++++|+||||||+.+|+++|+++|..+.++.+.+ ++||+++|+|.|+|+||++|+++++|+|+++
T Consensus        81 ~~k~~~~g~l~gsVt~~~I~~~l~~~~~~~~~~~i~~~~~~Ik~~G~~~v~v~l~~~v~~~i~v~V~~e  149 (149)
T 3i1n_H           81 ASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE  149 (149)
T ss_dssp             CSCCCGGGSCCCCCCTTCSTTTTCSSSCCCCCCCCCCCSCCCCSSSCCCCCCCSSSSCCCCCCCCCCCC
T ss_pred             EECCCCCCCCCCCEEHHHHHHHHHHCCCCCCHHHEECCCCCCCCCEEEEEEEEECCCEEEEEEEEEEEC
T ss_conf             630278984357240899999998749821688800788541164878999996599099999999979