HHsearch results for GI: 254780331 and protein with PDBid: 1nkw_F
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=100.00 E-value=2.8e-45 Score=304.88 Aligned_cols=145 Identities=37% Similarity=0.586 Sum_probs=141.4
Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 33465201117587783888277632110143787301220146888778999998422346789999887654321000
Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLI 93 (179)
Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~ 93 (179)
|+|||++|+ +||+.||+|+|++|||||||||+|+|+|||++|+++++.++...+++..+..+.|+.++++|++..+++.
T Consensus 1 MkvIL~~~~-~lG~~GdiV~Vk~GyaRN~LiP~~~A~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~l~~~ 79 (146)
T 1nkw_F 1 MQVILLEPS-RLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGVAVELS 79 (146)
T ss_pred CEEEEEECC-CCCCCCCEEEECCHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 979998447-7898899899876103244066670666789999999999999999999989999999998640455554
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEEC
Q ss_conf 2556543100341078999999860887686663026564320549999996397299999999725
Q gi|254780331|r 94 RAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARS 160 (179)
Q Consensus 94 ~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~V~V~~~ 160 (179)
+++++ |+||||||+.||+++|.+.|++|++++|.||+||+++|+|+|+|+||++|+++++|+|+++
T Consensus 80 ~~~~~-g~LfGsVt~~dI~~~l~~~g~~I~k~~I~l~~~Ik~~G~y~V~v~l~~~V~~~l~v~V~a~ 145 (146)
T 1nkw_F 80 VRAGE-GKIYGAVTHQDVANSLDQLGFDVDRRKIDMPKTVKEVGEYDIAYRAHPEVTIPMKLVVHAA 145 (146)
T ss_pred HCCCC-CCCCCCCCHHHHHHHHHHCCCEECHHHCCCCCCCCCCEEEEEEEEECCCEEEEEEEEEEEC
T ss_conf 21345-4465546899999999984980169993599721364899999993498799999999978