HHsearch results for GI: 254780331 and protein with PDBid: 1nkw_F

>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=100.00  E-value=2.8e-45  Score=304.88  Aligned_cols=145  Identities=37%  Similarity=0.586  Sum_probs=141.4

Q ss_pred             EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             33465201117587783888277632110143787301220146888778999998422346789999887654321000
Q gi|254780331|r   14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLI   93 (179)
Q Consensus        14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~   93 (179)
                      |+|||++|+ +||+.||+|+|++|||||||||+|+|+|||++|+++++.++...+++..+..+.|+.++++|++..+++.
T Consensus         1 MkvIL~~~~-~lG~~GdiV~Vk~GyaRN~LiP~~~A~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~l~~~   79 (146)
T 1nkw_F            1 MQVILLEPS-RLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGVAVELS   79 (146)
T ss_pred             CEEEEEECC-CCCCCCCEEEECCHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             979998447-7898899899876103244066670666789999999999999999999989999999998640455554


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEEC
Q ss_conf             2556543100341078999999860887686663026564320549999996397299999999725
Q gi|254780331|r   94 RAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARS  160 (179)
Q Consensus        94 ~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~V~V~~~  160 (179)
                      +++++ |+||||||+.||+++|.+.|++|++++|.||+||+++|+|+|+|+||++|+++++|+|+++
T Consensus        80 ~~~~~-g~LfGsVt~~dI~~~l~~~g~~I~k~~I~l~~~Ik~~G~y~V~v~l~~~V~~~l~v~V~a~  145 (146)
T 1nkw_F           80 VRAGE-GKIYGAVTHQDVANSLDQLGFDVDRRKIDMPKTVKEVGEYDIAYRAHPEVTIPMKLVVHAA  145 (146)
T ss_pred             HCCCC-CCCCCCCCHHHHHHHHHHCCCEECHHHCCCCCCCCCCEEEEEEEEECCCEEEEEEEEEEEC
T ss_conf             21345-4465546899999999984980169993599721364899999993498799999999978