HHSEARCH alignment of GI: 254780331 and SCOP domain: d2j01i1

Alignment
>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus thermophilus [TaxId: 274]}
Probab=99.83  E-value=3.5e-22  Score=157.56  Aligned_cols=90  Identities=27%  Similarity=0.448  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCHHHHCCCCCCCCEEEEEEEEEECC
Q ss_conf             8422346789999887654321000255654310034107899999986-088768666302656432054999999639
Q gi|254780331|r   69 AANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIE-EGFDVNRGQINLKSPIKSVGIHNIMISLHA  147 (179)
Q Consensus        69 ~~~~~~~~~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~-~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~  147 (179)
                      ++.++.+++|+.++++|++.+|+|.+++|+ |+||||||+.||+++|.+ .|++||+++|.|++|||++|.|.|+|+||+
T Consensus         1 kk~ae~~~~A~~l~~~L~~~~i~i~~k~~e-gkLfGSVt~~dIa~~l~~~~g~~Idk~~I~l~~~IK~~G~~~v~i~L~~   79 (91)
T d2j01i1           1 KRLAERKAEAERLKEILENLTLTIPVRAGE-TKIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHP   79 (91)
T ss_dssp             HHSSSTTTTTHHHHHHHTTCBCCCCCCBCS-SSBSSCCCHHHHHHHHHTTTCCCCCTTTTCCSSCCCSCEEEECCCSSSS
T ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEEEEECC-CCEECCCCHHHHHHHHHHCCCCEECHHHHHCCCCCCCEEEEEEEEEECC
T ss_conf             926899999999999861978999999369-9264335889999999752296003677213566413099999999569


Q ss_pred             CEEEEEEEEEEE
Q ss_conf             729999999972
Q gi|254780331|r  148 DVSTTITLNVAR  159 (179)
Q Consensus       148 ~V~a~i~V~V~~  159 (179)
                      +|+++++|+|++
T Consensus        80 ~V~a~i~v~VvA   91 (91)
T d2j01i1          80 EVPIQLKVSVVA   91 (91)
T ss_dssp             CCCCEEEECCC-
T ss_pred             CEEEEEEEEEEC
T ss_conf             979999999989


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L9 C-domain
superfamily: Ribosomal protein L9 C-domain
family: Ribosomal protein L9 C-domain
domain: Ribosomal protein L9 C-domain
species: Thermus thermophilus [TaxId: 274]