RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9
[Candidatus Liberibacter asiaticus str. psy62]
(179 letters)
>gnl|CDD|178893 PRK00137, rplI, 50S ribosomal protein L9; Reviewed.
Length = 147
Score = 175 bits (446), Expect = 7e-45
Identities = 61/147 (41%), Positives = 102/147 (69%)
Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLE 73
M+VILL++V NLG G+VV+VK+GYARN+L+P+ KA+RA K N E++R+ LEA E
Sbjct: 1 MKVILLEDVKNLGKKGDVVEVKDGYARNFLIPQGKAVRATKGNLKQLEARRAELEAKAAE 60
Query: 74 KKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPI 133
+ A+ E +++ L ++ AG+ G L+GSV+++DIA+ L ++G ++++ +I L PI
Sbjct: 61 ELAEAEALAEKLEGLTVTIKAKAGEDGKLFGSVTTKDIAEALKKQGIEIDKRKIELPGPI 120
Query: 134 KSVGIHNIMISLHADVSTTITLNVARS 160
K++G + + + LH +V+ TI +NV
Sbjct: 121 KTLGEYEVPVKLHPEVTATIKVNVVAE 147
>gnl|CDD|129262 TIGR00158, L9, ribosomal protein L9. Ribosomal protein L9 appears
to be universal in, but restricted to, eubacteria and
chloroplast.
Length = 148
Score = 110 bits (276), Expect = 2e-25
Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLE 73
M+VILL++V NLG G+VV+VK+GYARN+L+PK A+ A K+N FE++R LE
Sbjct: 1 MKVILLEDVANLGKRGDVVEVKDGYARNFLIPKGLAVPATKKNIEFFEARRKKLEEKLAA 60
Query: 74 KKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLK-SP 132
KA + + L ++ + GD G L+GS++++ IAD L G D+++ +I L
Sbjct: 61 NKAAAARLKEVLELGTLTISKKVGDEGKLFGSITTKQIADALKAAGLDLDKKKIELPDGV 120
Query: 133 IKSVGIHNIMISLHADVSTTITLNVA 158
I++ G H + I LH +V + + V
Sbjct: 121 IRTTGEHEVTIKLHEEVFAVLKVIVV 146
>gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S
ribosomal protein L9; Provisional.
Length = 838
Score = 82.2 bits (203), Expect = 8e-17
Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 10/154 (6%)
Query: 9 KGKKIMEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLE 68
KG+K ME+ILL ++ N G E++KV NGY N+L+ KKAL A+KEN + ++ +LE
Sbjct: 684 KGEKNMEIILLTDIKNKGKKHEIIKVNNGYG-NFLIQNKKALLADKENLAKIK-KKKILE 741
Query: 69 AANLEKKAKYEGISKDLAK----KNFSLIRAAGDTGYLYGSVSSRDIADLLIE-EGFDVN 123
EKK +E + K L K +L G G +YG ++ + I + + ++
Sbjct: 742 ---QEKKRNHELLMKKLKSEIDNKKITLDIQLGPKGKIYGKITLKQIVEEFHKIHNITID 798
Query: 124 RGQINLKSPIKSVGIHNIMISLHADVSTTITLNV 157
R +I+L++ I SVGI+ + + L + T LNV
Sbjct: 799 RKKISLENEIISVGIYPVDVFLTDQIKATFFLNV 832
>gnl|CDD|152117 pfam11681, DUF3277, Protein of unknown function (DUF3277). This
family of proteins represents a putative bacteriophage
protein. No function is currently known.
Length = 146
Score = 29.5 bits (66), Expect = 0.53
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 103 YGSVSSRDIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARST 161
YGS ++ EEG V + + G +M SLHAD S IT+ + +++
Sbjct: 24 YGSATA--------EEGITVAMAGDKNTMTVGADG--EVMHSLHADKSGQITIRLLKTS 72
>gnl|CDD|132086 TIGR03042, PS_II_psbQ_bact, photosystem II protein PsbQ. This
protein through the member sll1638 from Synechocystis
sp. PCC 6803, was shown to be part of the cyanobacteria
photosystem II. It is homologous to (but quite diverged
from) the chloroplast PsbQ protein, called
oxygen-evolving enhancer protein 3 (OEE3). We designate
this cyanobacteria protein PsbQ by homology.
Length = 142
Score = 29.3 bits (66), Expect = 0.58
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 20 QNVTNL--GPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANL 72
NL GPMGEV + ++ LLPK + A K L + + EAA L
Sbjct: 65 VFTRNLIHGPMGEVRREMTYLNQS-LLPKDQK-EALALAKELKDDLEKLDEAARL 117
>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase.
Length = 481
Score = 27.4 bits (61), Expect = 2.2
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 4 TQKNKKGKKIMEVILL----QNVTNLGPMGEVVKVKNGY 38
T +NK+ KK+ I++ QN + P+ E+V++K Y
Sbjct: 236 TAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKY 274
>gnl|CDD|177430 PHA02605, 54, baseplate subunit; Provisional.
Length = 305
Score = 27.1 bits (60), Expect = 2.6
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 79 EGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLL 115
+G++ + SLIR +G + YL G++SSR + LL
Sbjct: 65 QGLTTLVTAGTQSLIRKSGVSKYLIGAMSSRTVQSLL 101
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 25.8 bits (56), Expect = 6.0
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 111 IADLLIEEGFDVNRGQINLKSPIK------SVGIHNIMISLHADVSTTITLN 156
IA++L+E G DVN I +PI + + N+++S ADV+ I L+
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN-IIALD 210
>gnl|CDD|114751 pfam06047, SynMuv_product, Ras-induced vulval development
antagonist. This family is from synthetic multi-vulval
genes which encode chromatin-associated proteins
involved in transcriptional repression. This protein
has a role in antagonising Ras-induced vulval
development.
Length = 105
Score = 25.8 bits (57), Expect = 6.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 49 ALRANKENKILFESQRSVLEAANLEKKAKYEG 80
A+R KEN++ ++ L N E++AK E
Sbjct: 61 AVRIRKENQVYSAEEKRALAMFNYEERAKREN 92
>gnl|CDD|162409 TIGR01539, portal_lambda, phage portal protein, lambda family.
This model represents one of several distantly related
families of phage portal protein. This protein forms a
hole, or portal, that enables DNA passage during
packaging and ejection. It also forms the junction
between the phage head (capsid) and the tail proteins.
It functions as a dodecamer of a single polypeptide of
average mol. wt. of 40-90 KDa.
Length = 458
Score = 25.6 bits (56), Expect = 7.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 78 YEGISKDLAKKNFSLIRA 95
YE +S+D + N+S IR
Sbjct: 320 YEQLSRDYSGVNYSSIRQ 337
>gnl|CDD|131372 TIGR02319, CPEP_Pphonmut, carboxyvinyl-carboxyphosphonate
phosphorylmutase. This family consists of
carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP
phosphonomutase), an unusual enzyme involved in the
biosynthesis of the antibiotic bialaphos. So far, it is
known only in that pathway and only in Streptomyces
hygroscopicus. Some related proteins annotated as being
functionally equivalent are likely misannotated examples
of methylisocitrate lyase, an enzyme of priopionate
utilization.
Length = 294
Score = 25.5 bits (55), Expect = 8.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 122 VNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARSTEEMVKQDILGEHEEE 176
V+ IN K+ + +V + IM AD ++V R+T E + I+G H E+
Sbjct: 62 VSEQAINAKNIVLAVDVPVIM---DADAGYGNAMSVWRATREFERVGIVGYHLED 113
>gnl|CDD|177494 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 25.2 bits (55), Expect = 9.6
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 101 YLYGSVSSRDIADLLIEEGFDVN-----RGQINLKSPIKSVGIHNIMISLHADVS 150
G DI LL+E G DVN G L S IKS +++ AD++
Sbjct: 240 ISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKLKLLLEYGADIN 294
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.312 0.131 0.345
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,735,540
Number of extensions: 164634
Number of successful extensions: 299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 29
Length of query: 179
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 92
Effective length of database: 4,114,577
Effective search space: 378541084
Effective search space used: 378541084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.7 bits)