RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9
[Candidatus Liberibacter asiaticus str. psy62]
(179 letters)
>3i1n_H 50S ribosomal protein L9; ribosome structure, protein-RNA
complex, acetylation, ribonucleoprotein, ribosomal
protein, RNA-binding, rRNA- binding, methylation; 3.19A
{Escherichia coli k-12} PDB: 1p85_F 1p86_F 1vs8_H 2aw4_H
2awb_H 2gya_F 2gyc_F 1vs6_H 2i2v_H 2j28_H 2i2t_H*
2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H*
2qov_H 2qox_H ... (H:)
Length = 149
Score = 131 bits (332), Expect = 4e-32
Identities = 55/146 (37%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLE 73
M+VILL V NLG +G+ V VK GYARN+L+P+ KA+ A K+N FE++R+ LEA E
Sbjct: 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE 60
Query: 74 KKAKYEGISKDLAKKNFSLIRA-AGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINL-KS 131
A ++ + I + AGD G L+GS+ +RDIAD + G +V + ++ L
Sbjct: 61 VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG 120
Query: 132 PIKSVGIHNIMISLHADVSTTITLNV 157
+++ G H + +H++V + +NV
Sbjct: 121 VLRTTGEHEVSFQVHSEVFAKVIVNV 146
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond formation;
3.10A {Deinococcus radiodurans} (F:)
Length = 146
Score = 129 bits (327), Expect = 2e-31
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 2/144 (1%)
Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLE 73
M+VILL+ LG GEVV VK+GYARN+L+P+ A+ A + N E+Q +E +
Sbjct: 1 MQVILLEPS-RLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQ 59
Query: 74 KKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPI 133
+KA E ++ L L AG+ G +YG+V+ +D+A+ L + GFDV+R +I++ +
Sbjct: 60 EKAVAEDLASRLNGVAVELSVRAGE-GKIYGAVTHQDVANSLDQLGFDVDRRKIDMPKTV 118
Query: 134 KSVGIHNIMISLHADVSTTITLNV 157
K VG ++I H +V+ + L V
Sbjct: 119 KEVGEYDIAYRAHPEVTIPMKLVV 142
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Bacillus
stearothermophilus} (A:40-149)
Length = 110
Score = 87.8 bits (218), Expect = 7e-19
Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 54 KENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIAD 113
N E+Q+ + E+ A + + + L K ++ AG+ G L+GS++S+ IA+
Sbjct: 2 PANLKALEAQKQKEQRQAAEELANAKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAE 61
Query: 114 LLIE-EGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVAR 159
L G +++ +I L I+++G N+ + LH +V+ T+ ++V
Sbjct: 62 SLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPEVTATLKVHVTE 108
>2j01_I 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA,
translation; 2.8A {Thermus thermophilus} (I:41-148)
Length = 106
Score = 83.2 bits (206), Expect = 2e-17
Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 54 KENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIAD 113
+ N E++ E+KA+ E + + L ++ AG+ +YGSV+++DIA+
Sbjct: 1 ESNLKALEARIRAQAKRLAERKAEAERLKEILENLTLTIPVRAGE-TKIYGSVTAKDIAE 59
Query: 114 LLIEE-GFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNV 157
L + G ++ ++ L+ PIK +G + + H +V + ++V
Sbjct: 60 ALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHPEVPIQLKVSV 104
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Arabidopsis thaliana}
(J:122-197)
Length = 76
Score = 69.6 bits (171), Expect = 2e-13
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 88 KNFSLIRAAGDTGYLYGSVSSRDIADLLIEE-GFDVNRGQINLKSPIKSVGIHNIMISLH 146
F + R G ++GSV+++D+ D++ + D+++ ++L I+ G + + LH
Sbjct: 4 GAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLP-EIRETGEYIAELKLH 62
Query: 147 ADVSTTITLNV 157
DV+ + +NV
Sbjct: 63 PDVTARVKINV 73
>2j01_I 50S ribosomal protein L9; ribosome, tRNA, paromomycin,
mRNA, translation; 2.8A {Thermus thermophilus} (I:1-40)
Length = 40
Score = 67.6 bits (166), Expect = 1e-12
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRAN 53
M+VILL+ + NLG +G+VV VK GYARNYLLP+ A+ A
Sbjct: 1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLAT 40
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding
protein; 1.25A {Geobacillus stearothermophilus}
(A:1-39)
Length = 39
Score = 67.2 bits (165), Expect = 1e-12
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRA 52
M+VI L++V +G GE+ V +GYA N+L + A+ A
Sbjct: 1 MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEA 39
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Bacillus
stearothermophilus} (A:1-39)
Length = 39
Score = 67.2 bits (165), Expect = 1e-12
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRA 52
M+VI L++V G GE+ V +GYA N+L + A+ A
Sbjct: 1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEA 39
>2etb_A Transient receptor potential cation channel subfamily V
member 2; TRPV2, ankyrin repeat domain, transport
protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A
2f37_A (A:132-256)
Length = 125
Score = 26.2 bits (56), Expect = 2.4
Identities = 2/20 (10%), Positives = 7/20 (35%)
Query: 110 DIADLLIEEGFDVNRGQINL 129
+I +++ F +
Sbjct: 104 EIFRHILQREFSGAAAHHHH 123
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic,
bound nucleotide, AMP, NADH, structural genomics, PSI-2;
HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
(A:37-98)
Length = 62
Score = 26.1 bits (58), Expect = 2.7
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 12/57 (21%)
Query: 65 SVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFD 121
S+ EAA L + G + G + RD+ + +G
Sbjct: 9 SIGEAAGT------------LHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAA 53
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase; HET: FAD; 1.70A {Bos taurus}
(A:114-329)
Length = 216
Score = 26.2 bits (57), Expect = 2.8
Identities = 3/44 (6%), Positives = 10/44 (22%)
Query: 81 ISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVNR 124
+ ++I G+ + L + +
Sbjct: 25 ELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAAL 68
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function;
1.50A {Mycobacterium tuberculosis} (A:19-74)
Length = 56
Score = 26.1 bits (58), Expect = 3.3
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 12/59 (20%)
Query: 65 SVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVN 123
++ AA + + + GD L+G ++ RDI + G D N
Sbjct: 8 TLTAAAQYX------------REHDIGALPICGDDDRLHGXLTDRDIVIKGLAAGLDPN 54
>2dvw_A 26S proteasome non-ATPase regulatory subunit 10; ankyrin
repeats, A-helical domain, structural genomics, NPPSFA;
2.30A {Mus musculus} PDB: 2dwz_A* 1tr4_A 1uoh_A 1qym_A
(A:99-231)
Length = 133
Score = 25.9 bits (55), Expect = 3.5
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 102 LYGSVSSRDIADLLIEEGFDVN 123
L + + + EG + +
Sbjct: 111 LQVAKGGLGLILKRLAEGEEAS 132
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein
binding; 1.90A {Saccharomyces cerevisiae} (A:16-89)
Length = 74
Score = 25.2 bits (55), Expect = 4.9
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 85 LAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFD 121
L + S + + GYL + D+ L+ ++
Sbjct: 22 LTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 58
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding
protein, helix bundle, heparin, hexasaccharide, metal
binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens}
PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A (A:1-73,A:234-308)
Length = 148
Score = 24.8 bits (54), Expect = 6.8
Identities = 10/59 (16%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 120 FDVNRGQINLKSPIKSVGIHNI-MISLHADVSTTITLNVARSTEEMVKQDILGEHEEEI 177
FD R +N+++ IK+ G+ + ++++ + S ++A + + K+++ + +
Sbjct: 2 FDAERDALNIETAIKTKGVDEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSAL 60
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics,
PSI-2, protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} (A:18-74)
Length = 57
Score = 24.6 bits (54), Expect = 7.6
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 98 DTGYLYGSVSSRDIADLLIEEGFDVN 123
L G ++ RD + V
Sbjct: 30 KDEKLVGILTERDFSRKSYLLDKPVK 55
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus} (A:333-464)
Length = 132
Score = 24.5 bits (53), Expect = 8.1
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 84 DLAKKNFSLI---RAAGDTGYLYGSVSSRDIADLLIEEGF 120
D A + L R GD L G+ ++ + ++ IE
Sbjct: 44 DPASVSLPLRVRTRRRGDRMVLKGTGGTKKLKEIFIEAKI 83
>3dyj_A Talin-1; helix bundles, cytoskeletal protein,
integrin-bindin site, IBS2, cell membrane, cell
projection, cytoplasm, cytoskeleton, membrane; 1.85A
{Mus musculus} (A:179-332)
Length = 154
Score = 24.7 bits (54), Expect = 8.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 59 LFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAA 96
L + L+ N + K + G SK +A LI+AA
Sbjct: 111 LLDHVLLTLQKPNPDLKQQLTGHSKRVAGSVTELIQAA 148
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.312 0.131 0.345
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,200,157
Number of extensions: 48669
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 27
Length of query: 179
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 96
Effective length of database: 2,150,234
Effective search space: 206422464
Effective search space used: 206422464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.1 bits)