BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9
[Candidatus Liberibacter asiaticus str. psy62]
(179 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 179
Score = 360 bits (923), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MYDTQKNKKGKKIMEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILF 60
MYDTQKNKKGKKIMEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILF
Sbjct: 1 MYDTQKNKKGKKIMEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILF 60
Query: 61 ESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGF 120
ESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGF
Sbjct: 61 ESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGF 120
Query: 121 DVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARSTEEMVKQDILGEHEEEILS 179
DVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARSTEEMVKQDILGEHEEEILS
Sbjct: 121 DVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARSTEEMVKQDILGEHEEEILS 179
>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
psy62]
Length = 781
Score = 28.1 bits (61), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 122 VNRGQINLKSPIKSVGIHNIMISL-HADVSTTITLNVARSTEEMVKQDI 169
VN N+K S+G N+M+ + H +S T TLN+ EE VK I
Sbjct: 149 VNADVHNIKQAYASIGYLNVMVKVQHHSISPT-TLNITYVIEEGVKAKI 196
>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 744
Score = 24.6 bits (52), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 110 DIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADV---STTITLNVA-----RST 161
++ADL++ G ++ L ++ GIH IM + V + TI N + T
Sbjct: 537 EMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVT 596
Query: 162 EEMVKQDILGEHEEEIL 178
++ + ILGEH E L
Sbjct: 597 SKIDSRTILGEHGAEQL 613
>gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62]
Length = 343
Score = 23.1 bits (48), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 22 VTNLG-PMGEVVKVKNGYARNYLLPKKKA-LRANKENKILF------ESQRSVLEAANLE 73
+ NLG P G Y R +LL K+ L + + ILF + A +
Sbjct: 23 LVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIW 82
Query: 74 KKAKYEGI--------SKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFD 121
AK E I + +LAK+ S+ D YG S ++I + L EEG D
Sbjct: 83 NTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCD 138
>gi|255764474|ref|YP_003064854.2| glycosyl transferase group 1 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 352
Score = 22.3 bits (46), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 83 KDLAKKNFSLIRAAGDTGYLY 103
++ A K+FS+++ A D G +Y
Sbjct: 325 RERAVKHFSIVKEASDIGKVY 345
>gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 360
Score = 21.9 bits (45), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 128 NLKSPIKSVGIHNIMISLHADVSTTITLNVARSTEEMVKQDI 169
NL S + S+GI ++LH T + + V + + ++ +I
Sbjct: 203 NLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEI 244
>gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus
str. psy62]
Length = 523
Score = 21.6 bits (44), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 95 AAGDTGYLYGSVSSRDIADLLIEEG 119
A G G VS+RD+ L+EEG
Sbjct: 343 AQGSLDSFIGIVSARDLLRDLLEEG 367
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.312 0.131 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,072
Number of Sequences: 1233
Number of extensions: 4199
Number of successful extensions: 17
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 17
length of query: 179
length of database: 328,796
effective HSP length: 68
effective length of query: 111
effective length of database: 244,952
effective search space: 27189672
effective search space used: 27189672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 35 (18.1 bits)