HHsearch alignment for GI: 254780332 and conserved domain: CHL00095

Probab=93.64  E-value=0.65  Score=26.39  Aligned_cols=97  Identities=18%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHH-HC-CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             433677899999874-11-2366443210137765564167726776213100276999999999985101112333332
Q gi|254780332|r  180 DAMTVAIDMAGQAFN-RD-GRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY  257 (504)
Q Consensus       180 ~~~~~~~~~~~~~~~-~~-~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~  257 (504)
T Consensus       160 ~~L~ky~~dLT~~A~~GklDpvIGRd~EI~r~i~IL~-RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~-VP~~-----  232 (823)
T CHL00095        160 PTLEEFGNNLTKMAYEGNLDPVIGRDKEIERVIQILG-RRTKNNPILIGEPGVGKTAIAEGLAQRIANRD-VPDI-----  232 (823)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-HHCCCCCEEECCCCCCHHHHHHHHHHHHHCCC-CCHH-----
T ss_conf             5699997888999983899987595699999999997-73248850237999879999999999760889-9868-----


Q ss_pred             CCCCCCEEEEEECCCCHH--------HHHHHHHHHHHH
Q ss_conf             124797589995852179--------998789999874
Q gi|254780332|r  258 KTINGGIVGFYSLEMSSE--------QLATRIISEQTE  287 (504)
Q Consensus       258 ~~~~g~~Vl~fSlEMs~~--------el~~R~is~~s~  287 (504)
T Consensus       233 ----L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il~e  266 (823)
T CHL00095        233 ----LEDKLVLTLDIGLLLAGTKYRGEFEERIKKIMDE  266 (823)
T ss_pred             ----HCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             ----7599368842887753342226799999999999