HHsearch alignment for GI: 254780332 and conserved domain: COG0052
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis].
Probab=94.56 E-value=0.44 Score=27.68 Aligned_cols=142 Identities=24% Similarity=0.304 Sum_probs=76.8
Q ss_pred EEEECCCH-----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH---HHHHHHCC--C
Q ss_conf 77621310-----02769999999999851011123333321247975899958521799987899---99874101--1
Q gi|254780332|r 222 IIIAGRPG-----MGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRII---SEQTEVPS--S 291 (504)
Q Consensus 222 ~Viaarpg-----~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~i---s~~s~I~~--~ 291 (504)
T Consensus 30 fIf~~RngihIIDL~kT~~~l~~A~~~v~~-----------~~~~~g~ILfVgTK----~~a~~~V~~~A~r~g~~yV~~ 94 (252)
T COG0052 30 FIFGERNGIHIIDLQKTLERLREAYKFLRR-----------IAANGGKILFVGTK----KQAQEPVKEFAERTGAYYVNG 94 (252)
T ss_pred CCEEECCCCEEEEHHHHHHHHHHHHHHHHH-----------HHCCCCEEEEEECH----HHHHHHHHHHHHHHCCCEECC
T ss_conf 500002771798799989999999999999-----------97289979999520----887899999999959951327
Q ss_pred CCCCCCCCH--HHHHHHHHHH--HHHHHCCEEEECCCCCCHHHHHHHHHHHCCCC-------C-CCEEEE-CCHHHCCCC
Q ss_conf 000121376--8899899999--99862780782589988999999886402244-------4-746776-713532566
Q gi|254780332|r 292 KIRRGELTR--PDYEKIVACS--QVMQKLPLYIDQTGGISMSQLATRARRLKRQR-------G-LDLLIV-DYIQLMTTS 358 (504)
Q Consensus 292 ~i~~g~l~~--~e~~~i~~a~--~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~-------g-i~~vvI-DYLqli~~~ 358 (504)
T Consensus 95 RwLgG~LTN~~ti~~si~rl~~lE~~~~~~--~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~ViD------p- 165 (252)
T COG0052 95 RWLGGMLTNFKTIRKSIKRLKELEKMEEDG--FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVID------P- 165 (252)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEC------C-
T ss_conf 643742447405888999999999876414--3210078888777789999874014111267999899968------8-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 44321137889999999999998827919997713822016
Q gi|254780332|r 359 KKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN 399 (504)
Q Consensus 359 ~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~ 399 (504)
T Consensus 166 ~~----e~iAv~E--------A~klgIPVvAlvDTn~dpd~ 194 (252)
T COG0052 166 RK----EKIAVKE--------ANKLGIPVVALVDTNCDPDG 194 (252)
T ss_pred CH----HHHHHHH--------HHHCCCCEEEEECCCCCCCC
T ss_conf 17----6899999--------99759998998418999765