HHsearch alignment for GI: 254780332 and conserved domain: COG0305
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=879.63 Aligned_cols=434 Identities=44% Similarity=0.717 Sum_probs=417.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 67899789999999998329789999994429666379888999999999998399868643888973179832359489
Q gi|254780332|r 21 RESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGELTVPQ 100 (504)
Q Consensus 21 ~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~igg~~ 100 (504)
T Consensus 1 ~~~p~~~eAE~~vLG~il~~~~~~~~i~~~l~~~dFy~~~H~~IF~a~~~l~~~~~~id~vtv~~~l~~~~~~~~igg~~ 80 (435)
T COG0305 1 RLPPQDIEAEQAVLGGILLDPDAIERVSERLRPEDFYRPAHRLIYQAILDLYGQGEPIDLVTVSEELSDRGLLTRIGGAN 80 (435)
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHCCCHH
T ss_conf 98997779999986654048888999997268532076789999999999986689876728999986414476607589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 99999962211222367787878999999999876556775123444531566687655444432011344665430134
Q gi|254780332|r 101 YLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGFHTFSD 180 (504)
Q Consensus 101 yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~~~~~~~ 180 (504)
T Consensus 81 yl~~L~~~~ps~~Ni~~y~~iv~e~s~~R~Li~~~~~i~~~~~~~~~~~~-~~~l~~ae~~i~~i~~~-~~~~~~~~~~~ 158 (435)
T COG0305 81 YLATLIDRTPSAANIDYYAKIVKEKALLRELIEAGNEIVNLGYESEKDLD-EEVLDAAEKKIFDVAER-KNSEDFVHIGD 158 (435)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHH-HCCCCHHHHHH
T ss_conf 99999862887645999999999999999999999999996534544438-99999999999999975-21332244889
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 33677899999874112366443210137765564167726776213100276999999999985101112333332124
Q gi|254780332|r 181 AMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTI 260 (504)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~ 260 (504)
T Consensus 159 ~l~~~~~~i~~~~~~~~-~~Gi~tgf~~LD~~t~G~~~~dLiilAaRP~mGKTafalnia~n~a~~-------------- 223 (435)
T COG0305 159 LLKETMDEIEARFENGG-LIGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAAD-------------- 223 (435)
T ss_pred HHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH--------------
T ss_conf 99999999998735578-851446834567773377467779971689997589999999999985--------------
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 79758999585217999878999987410110001213768899899999998627807825899889999998864022
Q gi|254780332|r 261 NGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKR 340 (504)
Q Consensus 261 ~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~ 340 (504)
T Consensus 224 ~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~ 303 (435)
T COG0305 224 GRKPVAIFSLEMSEEQLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKL 303 (435)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 58975999826799999997534011545100212542689999999999987617854337888878889999998887
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 44474677671353256644321137889999999999998827919997713822016899998401014324223313
Q gi|254780332|r 341 QRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDA 420 (504)
Q Consensus 341 ~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdA 420 (504)
T Consensus 304 ~~~l~liviDYLQLm~~~~~~-~~R~qevseISr~LK~LAkEL~vPvIAlSQLsR~~E~R~dkrP~lSDLRESGsIEQDA 382 (435)
T COG0305 304 KHNLGLIVIDYLQLMTGGKKS-ENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDA 382 (435)
T ss_pred HCCCCEEEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCHHHCCCCCCCCCCCCCCCCHHHHC
T ss_conf 459738998865411367764-1268899999999999998748808864452441121145687555675578436657
Q ss_pred CEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECC
Q ss_conf 87889725566164423333222111000000112338838999974089972599999746854020077
Q gi|254780332|r 421 DVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALS 491 (504)
Q Consensus 421 D~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~ 491 (504)
T Consensus 383 DiVmflyRde~y~~~~~~-------------------~g~aeiIi~K~RnGp~GtV~l~f~~~~~~F~~~~ 434 (435)
T COG0305 383 DIVIFLHRDEAYLKDTPD-------------------RGEAEVIVAKNRNGPTGTVKLAFDPQFTKFKNLA 434 (435)
T ss_pred CEEEEEECHHHCCCCCCC-------------------CCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 789998142322677788-------------------8628999874368987459999834654301067