HHsearch alignment for GI: 254780332 and conserved domain: COG0467

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=99.39  E-value=9.9e-12  Score=108.80  Aligned_cols=189  Identities=27%  Similarity=0.335  Sum_probs=127.2

Q ss_pred             CCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf             64432101377655-64167726776213100276999999999985101112333332124797589995852179998
Q gi|254780332|r  200 AGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA  278 (504)
Q Consensus       200 ~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~  278 (504)
T Consensus         3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~---------------~ge~vlyvs~~e~~~~l~   67 (260)
T COG0467           3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAR---------------EGEPVLYVSTEESPEELL   67 (260)
T ss_pred             CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEEECCHHHHH
T ss_conf             65689974188883689889978999938998689999999997762---------------698589999206989999


Q ss_pred             HHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf             7899998741011-000121376889989999999862780782589988999999886402244474677671353256
Q gi|254780332|r  279 TRIISEQTEVPSS-KIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTT  357 (504)
Q Consensus       279 ~R~is~~s~I~~~-~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~  357 (504)
T Consensus        68 ~~~~~--~g~d~~~~~~~g~l~i~------d~~~~~~~~~~~~~~~-~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~  138 (260)
T COG0467          68 ENARS--FGWDLEVYIEKGKLAIL------DAFLSEKGLVSIVVGD-PLDLEELLDRIREIVEKEGADRVVIDSITELTL  138 (260)
T ss_pred             HHHHH--CCCCHHHHHHCCEEEEE------ECCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             99988--09977897544406876------3121112542010466-522899999999999862898899966307766


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf             64432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r  358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR  428 (504)
Q Consensus       358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R  428 (504)
T Consensus       139 ~~~~~----~~~r~~~~~l~~~~~~~~~t~~~~~~~~~--~~~~~----------~~~~~~~vdgvI~l~~  193 (260)
T COG0467         139 YLNDP----ALVRRILLLLKRFLKKLGVTSLLTTEAPV--EERGE----------SGVEEYIVDGVIRLDL  193 (260)
T ss_pred             HCCCH----HHHHHHHHHHHHHHHHCCEEEEEEECCCC--CCCCC----------CCCEEEEEEEEEEEEE
T ss_conf             52782----57899999999876506848999974433--46665----------6614216899999977