HHsearch alignment for GI: 254780332 and conserved domain: COG0467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=99.39 E-value=9.9e-12 Score=108.80 Aligned_cols=189 Identities=27% Similarity=0.335 Sum_probs=127.2
Q ss_pred CCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 64432101377655-64167726776213100276999999999985101112333332124797589995852179998
Q gi|254780332|r 200 AGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA 278 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~ 278 (504)
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~---------------~ge~vlyvs~~e~~~~l~ 67 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAR---------------EGEPVLYVSTEESPEELL 67 (260)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEEECCHHHHH
T ss_conf 65689974188883689889978999938998689999999997762---------------698589999206989999
Q ss_pred HHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf 7899998741011-000121376889989999999862780782589988999999886402244474677671353256
Q gi|254780332|r 279 TRIISEQTEVPSS-KIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 279 ~R~is~~s~I~~~-~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~ 357 (504)
T Consensus 68 ~~~~~--~g~d~~~~~~~g~l~i~------d~~~~~~~~~~~~~~~-~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~ 138 (260)
T COG0467 68 ENARS--FGWDLEVYIEKGKLAIL------DAFLSEKGLVSIVVGD-PLDLEELLDRIREIVEKEGADRVVIDSITELTL 138 (260)
T ss_pred HHHHH--CCCCHHHHHHCCEEEEE------ECCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 99988--09977897544406876------3121112542010466-522899999999999862898899966307766
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 64432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 139 ~~~~~----~~~r~~~~~l~~~~~~~~~t~~~~~~~~~--~~~~~----------~~~~~~~vdgvI~l~~ 193 (260)
T COG0467 139 YLNDP----ALVRRILLLLKRFLKKLGVTSLLTTEAPV--EERGE----------SGVEEYIVDGVIRLDL 193 (260)
T ss_pred HCCCH----HHHHHHHHHHHHHHHHCCEEEEEEECCCC--CCCCC----------CCCEEEEEEEEEEEEE
T ss_conf 52782----57899999999876506848999974433--46665----------6614216899999977