HHsearch alignment for GI: 254780332 and conserved domain: COG1125
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].
Probab=94.61 E-value=0.25 Score=29.58 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHHH
Q ss_conf 10137765564167726776213100276999999999985101112333332124797589995---852179998789
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATRI 281 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R~ 281 (504)
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTt-LkMINrLiept--------------~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTT-LKMINRLIEPT--------------SGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CCEEEEEEEEEECCCEEEEEECCCCCCHHHH-HHHHHCCCCCC--------------CCEEEECCEECCCCCHHHHHHHH
T ss_conf 7323322257765972899987899757879-99996055888--------------85389899044658889998753
Q ss_pred H---HHHHHHCCCCCCCC-----CCCHHHHHHHHHHHHHHHH---C-C-EEEECCC-CCC--HHHHHHHHHHHCCCCCCC
Q ss_conf 9---99874101100012-----1376889989999999862---7-8-0782589-988--999999886402244474
Q gi|254780332|r 282 I---SEQTEVPSSKIRRG-----ELTRPDYEKIVACSQVMQK---L-P-LYIDQTG-GIS--MSQLATRARRLKRQRGLD 345 (504)
Q Consensus 282 i---s~~s~I~~~~i~~g-----~l~~~e~~~i~~a~~~l~~---~-~-l~I~d~~-~~t--i~~I~~~~r~~~~~~gi~ 345 (504)
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa--dP~ 155 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAA--DPP 155 (309)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHCCCCHHHHHHHHHHHHC--CCC
T ss_conf 354222156776359877876155417798999999999999849897897320922218621358889999741--988
Q ss_pred EEEECCHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 677671353256644-32113788999999999999882791999771
Q gi|254780332|r 346 LLIVDYIQLMTTSKK-IEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 346 ~vvIDYLqli~~~~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
T Consensus 156 ilLMD-----EPFgALDpI~R~----~lQ~e~~~lq~~l~kTivfVTH 194 (309)
T COG1125 156 ILLMD-----EPFGALDPITRK----QLQEEIKELQKELGKTIVFVTH 194 (309)
T ss_pred EEEEC-----CCCCCCCHHHHH----HHHHHHHHHHHHHCCEEEEEEC
T ss_conf 68634-----885544765499----9999999999985987999935