HHsearch alignment for GI: 254780332 and conserved domain: COG1198

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=96.89  E-value=0.024  Score=37.28  Aligned_cols=140  Identities=21%  Similarity=0.241  Sum_probs=86.3

Q ss_pred             HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHHHCCCC
Q ss_conf             6416772677621310027699999999998510111233333212479758999585217-999878999987410110
Q gi|254780332|r  214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS-EQLATRIISEQTEVPSSK  292 (504)
Q Consensus       214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~-~el~~R~is~~s~I~~~~  292 (504)
T Consensus       215 ~~~~~---~Ll~GvTGSGKTEvYl~~i~~~L---------------~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~v  275 (730)
T COG1198         215 GGFAP---FLLDGVTGSGKTEVYLEAIAKVL---------------AQGKQVLVLVPEIALTPQLLARFKARFG-AKVAV  275 (730)
T ss_pred             CCCCC---EEEECCCCCCHHHHHHHHHHHHH---------------HCCCEEEEEECCCCCHHHHHHHHHHHHC-CCHHH
T ss_conf             56665---36767778858999999999999---------------7598799995653456999999999867-87453


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCH--HHHHHH
Q ss_conf             001213768899899999998627807825899889999998864022444746776713532566443211--378899
Q gi|254780332|r  293 IRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEEN--RVLEIT  370 (504)
Q Consensus       293 i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~--r~~~i~  370 (504)
T Consensus       276 lHS-~Ls~~er~~~W~~~~~-G~~~vVIGtRSAl-----------F~Pf~~LGLIIvDEEH---D~sYKq~~~prYhAR-  338 (730)
T COG1198         276 LHS-GLSPGERYRVWRRARR-GEARVVIGTRSAL-----------FLPFKNLGLIIVDEEH---DSSYKQEDGPRYHAR-  338 (730)
T ss_pred             HCC-CCCHHHHHHHHHHHHC-CCCEEEEEECHHH-----------CCCHHHCCEEEEECCC---CCCCCCCCCCCCCHH-
T ss_conf             146-5792789999999855-9715999712233-----------0723125769970245---643247777776789-


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             9999999999882791999771
Q gi|254780332|r  371 GITMALKALAKELNIPIIALSQ  392 (504)
Q Consensus       371 ~is~~lK~lA~e~~ipvi~lsQ  392 (504)
T Consensus       339 dvA---~~Ra~~~~~pvvLgSA  357 (730)
T COG1198         339 DVA---VLRAKKENAPVVLGSA  357 (730)
T ss_pred             HHH---HHHHHHCCCCEEEECC
T ss_conf             999---9998860998898268