HHsearch alignment for GI: 254780332 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=96.89 E-value=0.024 Score=37.28 Aligned_cols=140 Identities=21% Similarity=0.241 Sum_probs=86.3
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHHHCCCC
Q ss_conf 6416772677621310027699999999998510111233333212479758999585217-999878999987410110
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS-EQLATRIISEQTEVPSSK 292 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~-~el~~R~is~~s~I~~~~ 292 (504)
T Consensus 215 ~~~~~---~Ll~GvTGSGKTEvYl~~i~~~L---------------~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~v 275 (730)
T COG1198 215 GGFAP---FLLDGVTGSGKTEVYLEAIAKVL---------------AQGKQVLVLVPEIALTPQLLARFKARFG-AKVAV 275 (730)
T ss_pred CCCCC---EEEECCCCCCHHHHHHHHHHHHH---------------HCCCEEEEEECCCCCHHHHHHHHHHHHC-CCHHH
T ss_conf 56665---36767778858999999999999---------------7598799995653456999999999867-87453
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCH--HHHHHH
Q ss_conf 001213768899899999998627807825899889999998864022444746776713532566443211--378899
Q gi|254780332|r 293 IRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEEN--RVLEIT 370 (504)
Q Consensus 293 i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~--r~~~i~ 370 (504)
T Consensus 276 lHS-~Ls~~er~~~W~~~~~-G~~~vVIGtRSAl-----------F~Pf~~LGLIIvDEEH---D~sYKq~~~prYhAR- 338 (730)
T COG1198 276 LHS-GLSPGERYRVWRRARR-GEARVVIGTRSAL-----------FLPFKNLGLIIVDEEH---DSSYKQEDGPRYHAR- 338 (730)
T ss_pred HCC-CCCHHHHHHHHHHHHC-CCCEEEEEECHHH-----------CCCHHHCCEEEEECCC---CCCCCCCCCCCCCHH-
T ss_conf 146-5792789999999855-9715999712233-----------0723125769970245---643247777776789-
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9999999999882791999771
Q gi|254780332|r 371 GITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 371 ~is~~lK~lA~e~~ipvi~lsQ 392 (504)
T Consensus 339 dvA---~~Ra~~~~~pvvLgSA 357 (730)
T COG1198 339 DVA---VLRAKKENAPVVLGSA 357 (730)
T ss_pred HHH---HHHHHHCCCCEEEECC
T ss_conf 999---9998860998898268