HHsearch alignment for GI: 254780332 and conserved domain: COG1435
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism].
Probab=95.93 E-value=0.08 Score=33.34 Aligned_cols=120 Identities=21% Similarity=0.223 Sum_probs=76.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 67726776213100276999999999985101112333332124797589995852179998789999874101100012
Q gi|254780332|r 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRG 296 (504)
Q Consensus 217 ~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g 296 (504)
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~---------------~g~~v~vfkp~iD~R~~~~-~V~Sr~G~~~~A---- 61 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKE---------------AGMKVLVFKPAIDTRYGVG-KVSSRIGLSSEA---- 61 (201)
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHHHH---------------CCCEEEEEECCCCCCCCCC-EEEECCCCCCCC----
T ss_conf 44789999715768635999999999997---------------5980899852533535643-365315876653----
Q ss_pred CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 13768899899999998627807825899889999998864022444746776713532566443211378899999999
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMAL 376 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~l 376 (504)
T Consensus 62 ---------------------~~i~-----~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~-------------~~v~~l 102 (201)
T COG1435 62 ---------------------VVIP-----SDTDIFDEIAALHEKPPVDCVLIDEAQFFDE-------------ELVYVL 102 (201)
T ss_pred ---------------------EECC-----CHHHHHHHHHHCCCCCCCCEEEEEHHHHCCH-------------HHHHHH
T ss_conf ---------------------5638-----7578999998513478757899961671897-------------899999
Q ss_pred HHHHHHHCCCEEEEEECCCC
Q ss_conf 99998827919997713822
Q gi|254780332|r 377 KALAKELNIPIIALSQLSRQ 396 (504)
Q Consensus 377 K~lA~e~~ipvi~lsQLnR~ 396 (504)
T Consensus 103 ~~lad~lgi~Vi~-~GL~~D 121 (201)
T COG1435 103 NELADRLGIPVIC-YGLDTD 121 (201)
T ss_pred HHHHHHCCCEEEE-ECCCCC
T ss_conf 9998614988999-544653