HHsearch alignment for GI: 254780332 and conserved domain: COG4608
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].
Probab=96.72 E-value=0.036 Score=36.02 Aligned_cols=130 Identities=18% Similarity=0.261 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995---8521799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R~i 282 (504)
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~---------------~pt~G~i~f~g~~i~~~~~~~~~~~v~ 90 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE---------------EPTSGEILFEGKDITKLSKEERRERVL 90 (268)
T ss_pred EEEECCEEEEECCCCEEEEEECCCCCHHHHHHHHHCCC---------------CCCCCEEEECCCCHHHCCHHHHHHHHH
T ss_conf 48751156897589878999368887787999997283---------------888726998685311136667999999
Q ss_pred HHHHHHCCCC--C-CCC-CCCHHHHHHHHHHHHHHHHCCEEEECCCC--CCH---HHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 9987410110--0-012-13768899899999998627807825899--889---9999988640224447467767
Q gi|254780332|r 283 SEQTEVPSSK--I-RRG-ELTRPDYEKIVACSQVMQKLPLYIDQTGG--ISM---SQLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 283 s~~s~I~~~~--i-~~g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~--~ti---~~I~~~~r~~~~~~gi~~vvID 350 (504)
T Consensus 91 elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~~lq~~~~lt~lFIs 167 (268)
T COG4608 91 ELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFIS 167 (268)
T ss_pred HHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 99998098877863388303731335699999985098679743721101246799999999999998597589998