HHsearch alignment for GI: 254780332 and conserved domain: PRK04301
>PRK04301 radA DNA repair and recombination protein RadA; Validated.
Probab=99.37 E-value=4.9e-10 Score=95.91 Aligned_cols=217 Identities=19% Similarity=0.254 Sum_probs=134.7
Q ss_pred CCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
Q ss_conf 664432101377655-6416772677621310027699999999998510111233333212479758999585217999
Q gi|254780332|r 199 LAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL 277 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el 277 (504)
T Consensus 82 ~~~isTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~---------~~GGl~g~vvYIDTEgtF~-- 150 (318)
T PRK04301 82 IGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPE---------EEGGLEGKAVYIDTENTFR-- 150 (318)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCH---------HHCCCCCCEEEEECCCCCC--
T ss_conf 78247888788805479833670788866887870356677676533767---------7789886379995689869--
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH---HHHHHHHHCC-CCCCCEEEECCHH
Q ss_conf 87899998741011000121376889989999999862780782589988999---9998864022-4447467767135
Q gi|254780332|r 278 ATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ---LATRARRLKR-QRGLDLLIVDYIQ 353 (504)
Q Consensus 278 ~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~---I~~~~r~~~~-~~gi~~vvIDYLq 353 (504)
T Consensus 151 peRi~qia~~~--------g~d~~~---------~L--~nI~v~r~~--~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~ 209 (318)
T PRK04301 151 PERIEQMAEGL--------GLDPDE---------VL--DNIHVARAY--NSDHQMLLAEKAEELIKEGNNIKLVIVDSLT 209 (318)
T ss_pred HHHHHHHHHHH--------CCCHHH---------HH--HCEEEEECC--CHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 79999999984--------999789---------86--402686139--9899999999999999627880499994342
Q ss_pred H-CCCC--CC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 3-2566--44-3211378899999999999988279199977138220168--999984010143242233138788972
Q gi|254780332|r 354 L-MTTS--KK-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENR--DNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 354 l-i~~~--~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r--~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
T Consensus 210 alfR~e~~grg~l~~Rq~~L~~~l~~L~~lA~~~niaVvvTNQV~~~~~~~~g~~~~P~gG-----~~~ah~~t~Rl~Lr 284 (318)
T PRK04301 210 AHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTKPIGG-----HILGHTATFRIYLR 284 (318)
T ss_pred HHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCC-----HHHHCCCCEEEEEE
T ss_conf 3212104685309999999999999999999985957999613675476556887635662-----14030151899999
Q ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf 5566164423333222111000000112338838999974089972599999
Q gi|254780332|r 428 RDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLA 479 (504)
Q Consensus 428 R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~ 479 (504)
T Consensus 285 k~------~---------------------g~~R~~~l~~SP~lPe~~~~F~ 309 (318)
T PRK04301 285 KS------K---------------------GDKRIARLVDSPHLPEGEAVFR 309 (318)
T ss_pred EC------C---------------------CCEEEEEEEECCCCCCEEEEEE
T ss_conf 76------8---------------------9879999977889997278999