HHsearch alignment for GI: 254780332 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=96.01 E-value=0.16 Score=30.96 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=78.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 72677621310027699999999998510111233333212479758999585217-99987899998741011000121
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS-EQLATRIISEQTEVPSSKIRRGE 297 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~-~el~~R~is~~s~I~~~~i~~g~ 297 (504)
T Consensus 186 ~~~~LL~GvTGSGKTevYl~li~~~l~---------------~GkqvLiLvPEI~lt~q~~~rl~~~f-g~~v~v~-HS~ 248 (699)
T PRK05580 186 FSAFLLDGVTGSGKTEVYLQAIAEALA---------------QGKQALVLVPEIALTPQLLARFRARF-GARVAVL-HSG 248 (699)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHH---------------CCCCEEEEECCHHHHHHHHHHHHHHH-CCCEEEE-CCC
T ss_conf 871787478986079999999999997---------------39978999176787899999999870-9957996-488
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf 376889989999999862780782589988999999886402244474677671353256644-3211378899999999
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKK-IEENRVLEITGITMAL 376 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~-~~~~r~~~i~~is~~l 376 (504)
T Consensus 249 ls~~eR~~~w~~i~~-G~~~IVIGtRSAv-----------FaP~~nLgLIIVDEEhd--~SYKq~~~Pry~AR-dvA--- 310 (699)
T PRK05580 249 LSDGERYRAWLAALR-GEARVVIGTRSAL-----------FAPFKNLGLIIVDEEHD--DSYKQQDGPRYHAR-DVA--- 310 (699)
T ss_pred CCHHHHHHHHHHHHC-CCCEEEEECCCEE-----------ECCCCCCCEEEEECCCC--HHHCCCCCCCCCHH-HHH---
T ss_conf 985799999999976-9971999736011-----------06578984899973654--54446668761199-999---
Q ss_pred HHHHHHHCCCEEEEEE
Q ss_conf 9999882791999771
Q gi|254780332|r 377 KALAKELNIPIIALSQ 392 (504)
Q Consensus 377 K~lA~e~~ipvi~lsQ 392 (504)
T Consensus 311 ~~Ra~~~~~~liLgSa 326 (699)
T PRK05580 311 VLRAKQEGCPVVLGSA 326 (699)
T ss_pred HHHHHHHCCCEEECCC
T ss_conf 9999984998896168