HHsearch alignment for GI: 254780332 and conserved domain: PRK05636
>PRK05636 replicative DNA helicase; Provisional.
Probab=100.00 E-value=0 Score=948.23 Aligned_cols=443 Identities=33% Similarity=0.564 Sum_probs=419.3
Q ss_pred CCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHH
Q ss_conf 30102678997899999999983297899999944296663798889999999999983998686438889731798323
Q gi|254780332|r 16 DSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGE 95 (504)
Q Consensus 16 ~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~ 95 (504)
T Consensus 65 ~~~~~r~PP~niEAEqaVLGaiLld~~~~~~V~~~L~peDFY~~~H~~IF~AI~~L~~~g~piD~vTV~~~L~~~g~Le~ 144 (507)
T PRK05636 65 EYRDFRQPPYDNDAEQGVLGAMLLSPDTVIDIVEVLVPEDFYRPAHQLIFQAIIDLFSDNKEIDPVIVSGRLDRTNDLER 144 (507)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHH
T ss_conf 46777899998999999999998186489999965598768988899999999999977998779999999864698353
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 59489999999622112223677878789999999998765567751234445315666876554444320113446654
Q gi|254780332|r 96 LTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGF 175 (504)
Q Consensus 96 igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~~ 175 (504)
T Consensus 145 iGG~~YL~~L~~~~pS~ani~~YA~iVkeks~~R~LI~~a~~i~~la~~~~~~~di~~~ld~ae~~l~~i~~~~~-~~~~ 223 (507)
T PRK05636 145 VGGAAYLHSLIQSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDEGAEVDAVIDRAQQEVFAVSQKNQ-SEDY 223 (507)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCC
T ss_conf 183999999997189788899999999999999999999999999874378777899999999999999860377-8885
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 30134336778999998741123664432101377655641677267762131002769999999999851011123333
Q gi|254780332|r 176 HTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDG 255 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~ 255 (504)
T Consensus 224 ~~~~d~l~~~~~~ie~~~~~~g~~~Gi~TGf~~LD~~t~Gl~~G~LiIiAARPsmGKTalAlnia~n~A~~--------- 294 (507)
T PRK05636 224 AVLADILDETMAEIEMLESDGGIATGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTIALDFMRSASIK--------- 294 (507)
T ss_pred EEHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH---------
T ss_conf 56999999999999999857999525658808899755088835679997378786689999999999987---------
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
Q ss_conf 32124797589995852179998789999874101100012137688998999999986278078258998899999988
Q gi|254780332|r 256 SYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRA 335 (504)
Q Consensus 256 ~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~ 335 (504)
T Consensus 295 -----~g~~v~~fSLEMs~~ql~~Rlla~~s~V~~~~ir~g~l~~~~~~~l~~a~~~l~~~pl~IdD~~~lti~~Ira~a 369 (507)
T PRK05636 295 -----NNKASVIFSLEMSKSEIVMRLLSAEAEVRLADMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKA 369 (507)
T ss_pred -----CCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
T ss_conf -----699379971569989999999998479887888558878899999999999986198899849997699999999
Q ss_pred HHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 64022444746776713532566443211378899999999999988279199977138220168999984010143242
Q gi|254780332|r 336 RRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGS 415 (504)
Q Consensus 336 r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~ 415 (504)
T Consensus 370 Rrlk~~~~l~livVDYLQLm~~~~~-~~~R~~ev~~ISr~LK~lAkel~vpVi~LsQLnR~~E~R~dkrP~lsDLReSG~ 448 (507)
T PRK05636 370 RRLKQKHDLKMIVVDYLQLMSSGKR-VESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGS 448 (507)
T ss_pred HHHHHHCCCCEEEEEHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCC
T ss_conf 9998617999899845884568888-766899999999999999999799889971268442347999977202126451
Q ss_pred HHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCC
Q ss_conf 233138788972556616442333322211100000011233883899997408997259999974685402007744
Q gi|254780332|r 416 IEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSDS 493 (504)
Q Consensus 416 IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~~ 493 (504)
T Consensus 449 IEQDADvV~~l~R~~~~~~~~~-------------------~~~~~elivaKnRnG~~G~v~l~f~~~~~rF~dla~g 507 (507)
T PRK05636 449 LEQDADMVMLLYRPDSQDKDDE-------------------RAGEADIILAKHRGGPIDTVQVAHQLHYSRFVDMARG 507 (507)
T ss_pred HHHHCCEEEEECCCCCCCCCCC-------------------CCCCEEEEEECCCCCCCEEEEEEEECCCCCHHCCCCC
T ss_conf 1542779999645343588887-------------------7780699997268898516999984586742204798