HHsearch alignment for GI: 254780332 and conserved domain: PRK05973
>PRK05973 replicative DNA helicase; Provisional.
Probab=100.00 E-value=5.3e-41 Score=331.67 Aligned_cols=174 Identities=22% Similarity=0.393 Sum_probs=143.5
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321247975899958521799987899998741
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEV 288 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I 288 (504)
T Consensus 54 a~~l~~gLqPGDLIIlAARPsMGKTafaLnla~~A~k---------------~g~~v~fFSLEM~~~ql~~RL~~~~~~- 117 (237)
T PRK05973 54 AEELFGQLRPGDLVLLGARPGQGKTLLGLELAVEAMK---------------SGRTGVFFTLEYTEKDVLDRLRALGVD- 117 (237)
T ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------HCCCEEEEEECCCHHHHHHHHHHCCCC-
T ss_conf 8998568998677999428988789999999999999---------------599669996159999999999972778-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHH
Q ss_conf 01100012137688998999999986278078258998899999988640224447467767135325664432113788
Q gi|254780332|r 289 PSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLE 368 (504)
Q Consensus 289 ~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~ 368 (504)
T Consensus 118 ---~--------~~-----------~~~~~~iD~sd~i~~~~i---~rrl~~~~~~~LIVIDYLQLM~~-----~r~~~e 167 (237)
T PRK05973 118 ---R--------AQ-----------FADLFEFDTSDAICADYI---IARLASAPRGTLVVIDYLQLLDQ-----RREKPD 167 (237)
T ss_pred ---H--------HH-----------CCCCCEECCCHHHHHHHH---HHHHHHCCCCCEEEEECHHHHCC-----CCCCCC
T ss_conf ---3--------34-----------067510038303339999---99985278996899976775266-----778866
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-HHCCEEEEEEC
Q ss_conf 9999999999998827919997713822016899998401014324223-31387889725
Q gi|254780332|r 369 ITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIE-QDADVVLFVIR 428 (504)
Q Consensus 369 i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IE-qdAD~v~~l~R 428 (504)
T Consensus 168 iseisRsLK~lAkEl~vPVvaLSQLnRs~E~R~dKrP~lSDLRlpnp~dl~lf~k~~fl~~ 228 (237)
T PRK05973 168 LSVQVRALKSFARKRGVILVFISQIDRSFDPASKPLPDIRDVRLPNPLDLSLFDKACFLNN 228 (237)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHEEECC
T ss_conf 8999999999999869939994003643223567899740136998210423032103127