HHsearch alignment for GI: 254780332 and conserved domain: PRK06067

>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=99.56  E-value=1.4e-13  Score=122.75  Aligned_cols=207  Identities=19%  Similarity=0.246  Sum_probs=130.6

Q ss_pred             CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r  202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR  280 (504)
Q Consensus       202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R  280 (504)
T Consensus        14 i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~---------------~g~~~~~~~~ee~~~~~~~~   78 (241)
T PRK06067         14 ISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALN---------------QGKRGLAITTENTSKSYLKQ   78 (241)
T ss_pred             CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEECCCHHHHHHH
T ss_conf             566875578650699779908999807998879999999999986---------------79829999942899999999


Q ss_pred             HHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCEEEE--CCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf             9999874101100-0121376889989999999862780782--589988999999886402244474677671353256
Q gi|254780332|r  281 IISEQTEVPSSKI-RRGELTRPDYEKIVACSQVMQKLPLYID--QTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTT  357 (504)
Q Consensus       281 ~is~~s~I~~~~i-~~g~l~~~e~~~i~~a~~~l~~~~l~I~--d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~  357 (504)
T Consensus        79 ~~~~--g~dl~~~~~~G~L---------------~i~~~~~~~~~~~~~~~~~ll~~l~~~v~~~~~~~vVIDSls~l~~  141 (241)
T PRK06067         79 MESL--KLDISDFFIWGYL---------------RIFPLNTEGFEWNSELAEKLLDLIIEFIKRRREEVIIIDSLTIFAT  141 (241)
T ss_pred             HHHC--CCCHHHHHHCCCC---------------EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHC
T ss_conf             9983--9985999866970---------------5783241113421556899999999999971998999928017541


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCC
Q ss_conf             64432113788999999999999882791999771382201689999840101432422331387889725566164423
Q gi|254780332|r  358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKE  437 (504)
Q Consensus       358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~  437 (504)
T Consensus       142 ~~~-----~~~~~~~l~~l~~l~~-~g~tvllt~--~~~~~----~~~~------~~~i~~vaD~vI~Lr~~~~~g~~--  201 (241)
T PRK06067        142 YAS-----EDDVLNFFTECKNLCD-NGKTILITL--HPYAF----SEDT------LVRIRSICDVHLKLRKEQVGDRY--  201 (241)
T ss_pred             CCC-----HHHHHHHHHHHHHHHH-CCCEEEEEE--CCCCC----CCCC------CCCEEEEEEEEEEEEEEEECCEE--
T ss_conf             388-----8999999999999996-898899990--56764----7664------31248998999995878439999--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC--CEE-EEEEEEC
Q ss_conf             33322211100000011233883899997408997--259-9999746
Q gi|254780332|r  438 PTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGP--TGT-VTLAFQA  482 (504)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~--~g~-~~~~f~~  482 (504)
T Consensus       202 ----------------------~R~L~V~K~RGs~h~~g~~i~F~I~~  227 (241)
T PRK06067        202 ----------------------VKVLEVVKLRGARKTTGNIISFDVDP  227 (241)
T ss_pred             ----------------------EEEEEEEEECCCCCCCCCEEEEEECC
T ss_conf             ----------------------99999999159989988888899838