HHsearch alignment for GI: 254780332 and conserved domain: PRK06067
>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=99.56 E-value=1.4e-13 Score=122.75 Aligned_cols=207 Identities=19% Similarity=0.246 Sum_probs=130.6
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
T Consensus 14 i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~---------------~g~~~~~~~~ee~~~~~~~~ 78 (241)
T PRK06067 14 ISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALN---------------QGKRGLAITTENTSKSYLKQ 78 (241)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEECCCHHHHHHH
T ss_conf 566875578650699779908999807998879999999999986---------------79829999942899999999
Q ss_pred HHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCEEEE--CCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf 9999874101100-0121376889989999999862780782--589988999999886402244474677671353256
Q gi|254780332|r 281 IISEQTEVPSSKI-RRGELTRPDYEKIVACSQVMQKLPLYID--QTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 281 ~is~~s~I~~~~i-~~g~l~~~e~~~i~~a~~~l~~~~l~I~--d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~ 357 (504)
T Consensus 79 ~~~~--g~dl~~~~~~G~L---------------~i~~~~~~~~~~~~~~~~~ll~~l~~~v~~~~~~~vVIDSls~l~~ 141 (241)
T PRK06067 79 MESL--KLDISDFFIWGYL---------------RIFPLNTEGFEWNSELAEKLLDLIIEFIKRRREEVIIIDSLTIFAT 141 (241)
T ss_pred HHHC--CCCHHHHHHCCCC---------------EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHC
T ss_conf 9983--9985999866970---------------5783241113421556899999999999971998999928017541
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCC
Q ss_conf 64432113788999999999999882791999771382201689999840101432422331387889725566164423
Q gi|254780332|r 358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKE 437 (504)
Q Consensus 358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~ 437 (504)
T Consensus 142 ~~~-----~~~~~~~l~~l~~l~~-~g~tvllt~--~~~~~----~~~~------~~~i~~vaD~vI~Lr~~~~~g~~-- 201 (241)
T PRK06067 142 YAS-----EDDVLNFFTECKNLCD-NGKTILITL--HPYAF----SEDT------LVRIRSICDVHLKLRKEQVGDRY-- 201 (241)
T ss_pred CCC-----HHHHHHHHHHHHHHHH-CCCEEEEEE--CCCCC----CCCC------CCCEEEEEEEEEEEEEEEECCEE--
T ss_conf 388-----8999999999999996-898899990--56764----7664------31248998999995878439999--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC--CEE-EEEEEEC
Q ss_conf 33322211100000011233883899997408997--259-9999746
Q gi|254780332|r 438 PTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGP--TGT-VTLAFQA 482 (504)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~--~g~-~~~~f~~ 482 (504)
T Consensus 202 ----------------------~R~L~V~K~RGs~h~~g~~i~F~I~~ 227 (241)
T PRK06067 202 ----------------------VKVLEVVKLRGARKTTGNIISFDVDP 227 (241)
T ss_pred ----------------------EEEEEEEEECCCCCCCCCEEEEEECC
T ss_conf ----------------------99999999159989988888899838