HHsearch alignment for GI: 254780332 and conserved domain: PRK07004
>PRK07004 replicative DNA helicase; Provisional.
Probab=100.00 E-value=0 Score=929.83 Aligned_cols=447 Identities=40% Similarity=0.646 Sum_probs=416.5
Q ss_pred CCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCH
Q ss_conf 54301026789978999999999832978999999442966637988899999999999839986864388897317983
Q gi|254780332|r 14 KEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDML 93 (504)
Q Consensus 14 ~~~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l 93 (504)
T Consensus 6 ~~~~~~~r~pP~~leaE~aVLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L~~~g~~iD~vtv~~~L~~~~~l 85 (460)
T PRK07004 6 DPQIESLKVPPHSIEAEQSVLGGLLLDNAAWDRIADFLSQSDFYRYDHRIIFEHIGRLIAATRPADVITVYEALTTSGKA 85 (460)
T ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCH
T ss_conf 75743358999989999999999983941799998527987789889999999999999779998898999998425964
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CC
Q ss_conf 23594899999996221122236778787899999999987655677512344453156668765544443201134-46
Q gi|254780332|r 94 GELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGR-YD 172 (504)
Q Consensus 94 ~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~-~~ 172 (504)
T Consensus 86 ~~iGg~~yL~~L~~~~~s~ani~~ya~iVke~~~~R~li~~~~~i~~~a~~~~-~~d~~~il~~ae~~l~~i~~~~~~~~ 164 (460)
T PRK07004 86 EEVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFNPQ-GKEVRQLLDEAESKVFSIAEEGARGT 164 (460)
T ss_pred HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 54288999999997398489999999999889999999999999998732887-77899999999999999986156678
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6543013433677899999874--11236644321013776556416772677621310027699999999998510111
Q gi|254780332|r 173 GGFHTFSDAMTVAIDMAGQAFN--RDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAE 250 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~ 250 (504)
T Consensus 165 ~~~~~i~~~l~~~~e~ie~~~~~~~~~~~~Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTafAlniA~n~A~~---- 240 (460)
T PRK07004 165 QGFLEIGPLLTQVVERIDTLYHTANPSDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE---- 240 (460)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH----
T ss_conf 7603099999999999999996159999853867938898652389877579997368764269999999999872----
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH
Q ss_conf 23333321247975899958521799987899998741011000121376889989999999862780782589988999
Q gi|254780332|r 251 LQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ 330 (504)
Q Consensus 251 ~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~ 330 (504)
T Consensus 241 ----------~g~~V~~FSLEMs~eql~~Rlls~~s~I~~~~ir~g~l~~~e~~~i~~a~~~l~~~~l~IdD~~~lt~~~ 310 (460)
T PRK07004 241 ----------YGLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPME 310 (460)
T ss_pred ----------CCCCEEEECCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf ----------5886699847799999999999860698821100788999999999999999855974896898730789
Q ss_pred HHHHHHHHCCCCC-CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 9998864022444-746776713532566443211378899999999999988279199977138220168999984010
Q gi|254780332|r 331 LATRARRLKRQRG-LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSD 409 (504)
Q Consensus 331 I~~~~r~~~~~~g-i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsD 409 (504)
T Consensus 311 ira~~Rr~~~~~g~l~lvviDYlqli~~~~~-~~~r~~ei~~isr~lK~lAkel~ipvi~lsQLnR~~e~R~dkrP~lsD 389 (460)
T PRK07004 311 LRSRARRLARQCGKLGLIIIDYLQLMSGSSQ-GENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSD 389 (460)
T ss_pred HHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHH
T ss_conf 9999999997435888998507754478888-888999999999999999999699789970468431227899875423
Q ss_pred CCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEE
Q ss_conf 14324223313878897255661644233332221110000001123388389999740899725999997468540200
Q gi|254780332|r 410 LRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSA 489 (504)
Q Consensus 410 Lr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~ 489 (504)
T Consensus 390 LReSGsIEQDADvV~fL~r~~~y~~~~~-------------------~~~~~e~ivaK~R~G~~g~v~l~f~~~~~rF~n 450 (460)
T PRK07004 390 LRESGAIEQDADVILFIYRDEVYNPDSP-------------------DKGTAEIIIGKQRNGPIGPVRLTFLGQYTKFDN 450 (460)
T ss_pred HCCCCCHHHCCCEEEEECCCCCCCCCCC-------------------CCCEEEEEEECCCCCCCEEEEEEEECCCCCHHC
T ss_conf 2023320320778999754101589988-------------------888169999736889960699998568773512
Q ss_pred CCCCCC
Q ss_conf 774466
Q gi|254780332|r 490 LSDSSY 495 (504)
Q Consensus 490 ~~~~~~ 495 (504)
T Consensus 451 ~~~~~~ 456 (460)
T PRK07004 451 FAGAQN 456 (460)
T ss_pred CCCCCC
T ss_conf 567767