HHsearch alignment for GI: 254780332 and conserved domain: PRK08506
>PRK08506 replicative DNA helicase; Provisional.
Probab=100.00 E-value=0 Score=921.00 Aligned_cols=453 Identities=35% Similarity=0.573 Sum_probs=408.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 67899789999999998329789999994429666379888999999999998399868643888973179832359489
Q gi|254780332|r 21 RESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGELTVPQ 100 (504)
Q Consensus 21 ~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~igg~~ 100 (504)
T Consensus 2 ~~~l~nieAEqaVLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L~~~~~piD~vtl~~~L~~~~~l~~----~ 77 (473)
T PRK08506 2 QQNLYDLDIERSVLSSIVFSPEAFEEIAGVLEPKDFYLPAHQDIFEAMIKLHNEDEPIDEEFIRKKLPKDKKIDE----E 77 (473)
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCH----H
T ss_conf 987668999999999998597389999831798778988999999999999967998889999999874687437----6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 99999962211222367787878999999999876556775123444531566687655444432011344665430134
Q gi|254780332|r 101 YLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGFHTFSD 180 (504)
Q Consensus 101 yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~~~~~~~ 180 (504)
T Consensus 78 ~l~~~~~-~~s~ani~~Ya~iV~e~s~~R~li~~~~~i~~~a~~~~--~~~~~~l~~ae~~l~~i~~~~-~~~~~~~~~~ 153 (473)
T PRK08506 78 ILLEILA-ANPIINIEAYVEEIKEKSIKRKLLSLANTIPEQAVEED--QASSDILDEVERELYSITNGS-NSEDFKDSKE 153 (473)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHCC-CCCCCCCHHH
T ss_conf 6877632-78688899999999999999999999999999854479--989999999999999998257-8788512999
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 336778999998741-1236644321013776556416772677621310027699999999998510111233333212
Q gi|254780332|r 181 AMTVAIDMAGQAFNR-DGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKT 259 (504)
Q Consensus 181 ~~~~~~~~~~~~~~~-~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~ 259 (504)
T Consensus 154 ~~~~~~~~i~~~~~~~~~~~~Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTAfAlniA~~~a~-------------- 219 (473)
T PRK08506 154 VIKSTMEHIKKQKRLGNKDIIGLDTGFKQLNKMTKGFNKGDLIIIAARPSMGKTTLVLNMVLKALN-------------- 219 (473)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--------------
T ss_conf 999999999999855899853477880878887269985627999507998678999999999996--------------
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 47975899958521799987899998741011000121376889989999999862780782589988999999886402
Q gi|254780332|r 260 INGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLK 339 (504)
Q Consensus 260 ~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~ 339 (504)
T Consensus 220 -~~~~V~~FSLEMs~~ql~~Rlls~~s~V~~~~lr~g~l~~~e~~~~~~a~~~l~~~~l~IdD~~~lti~~Ira~~Rr~k 298 (473)
T PRK08506 220 -QGKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWENLSDACDELSQKKLFVYDSGYVNIHQVRAQLRKLK 298 (473)
T ss_pred -CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf -5996589822479999999999972887831000689999999999999999865988998899999999999999999
Q ss_pred CCCC-CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 2444-746776713532566443211378899999999999988279199977138220168999984010143242233
Q gi|254780332|r 340 RQRG-LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQ 418 (504)
Q Consensus 340 ~~~g-i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEq 418 (504)
T Consensus 299 ~~~~~l~livIDYLQLm~~~~~-~~~R~~ev~~ISr~LK~lAkEl~vPViaLSQLnR~vE~R~dkrP~lSDLReSGsIEQ 377 (473)
T PRK08506 299 SQHPEIGLAVIDYLQLMSGSKN-FKDRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQ 377 (473)
T ss_pred HHCCCCCEEEEEHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 9769987899636755468887-530889999999999999999699799970368765557899876001134331354
Q ss_pred HCCEEEEEECHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCCCC
Q ss_conf 13878897255661644233332221110---000001123388389999740899725999997468540200774466
Q gi|254780332|r 419 DADVVLFVIRDEYYIRNKEPTNKDDILAY---TKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSDSSY 495 (504)
Q Consensus 419 dAD~v~~l~R~~~y~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~~~~ 495 (504)
T Consensus 378 DADvV~flyR~~yY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ae~iiaK~RnG~tG~v~l~f~~~~trF~dl~~g~~ 457 (473)
T PRK08506 378 DADIILFVYRDDVYKEREEKEKEDKAKKEGKEERRIHKQNKSIEEAEIIIGKNRNGPTGTVKLIFQKEFTRFVDKPIGSE 457 (473)
T ss_pred HCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 37689996527753665333333321111321112222356777248999657789872599998658777023899987
Q ss_pred CC
Q ss_conf 77
Q gi|254780332|r 496 QT 497 (504)
Q Consensus 496 ~~ 497 (504)
T Consensus 458 ~~ 459 (473)
T PRK08506 458 LE 459 (473)
T ss_pred CC
T ss_conf 30