HHsearch alignment for GI: 254780332 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=99.36 E-value=1.8e-10 Score=99.21 Aligned_cols=208 Identities=17% Similarity=0.265 Sum_probs=134.7
Q ss_pred CCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 4432101377655-641677267762131002769999999999851011123333321247975899958521799987
Q gi|254780332|r 201 GVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLAT 279 (504)
Q Consensus 201 Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~ 279 (504)
T Consensus 5 ~~~~~~d~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~---------------~g~~~~yis~e~t~~~~i~ 69 (230)
T PRK08533 5 KIELDGDELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQ---------------NGYSVSYVSSQLTTTEFIK 69 (230)
T ss_pred CEECCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEECCCHHHHHH
T ss_conf 0105713578871789889848999868998789999999999987---------------8986999994389999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCC----CHHHHHHHHHHHCCCCCCCEEEECCHH-H
Q ss_conf 89999874101100012137688998999999986278078258998----899999988640224447467767135-3
Q gi|254780332|r 280 RIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGI----SMSQLATRARRLKRQRGLDLLIVDYIQ-L 354 (504)
Q Consensus 280 R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~----ti~~I~~~~r~~~~~~gi~~vvIDYLq-l 354 (504)
T Consensus 70 qm~s~g~di~~-~~~~G~l-------------------~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l 129 (230)
T PRK08533 70 QMMSLGYDINK-KLISGKL-------------------LYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSL 129 (230)
T ss_pred HHHHCCCCCHH-HHHCCCE-------------------EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 99986998179-9757967-------------------999613433540457899999973266437989999053188
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCC
Q ss_conf 25664432113788999999999999882791999771382201689999840101432422331387889725566164
Q gi|254780332|r 355 MTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIR 434 (504)
Q Consensus 355 i~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~ 434 (504)
T Consensus 130 ~~~~~-----~~~~~~~~~~~lk~l~s~gktIilTv~p~~~~e-------~~------l~~lrs~aDv~i~L~~~~vGg~ 191 (230)
T PRK08533 130 VSRDA-----SEVQIRDLMAFFKRISSLNKVIILTANPKELPE-------SV------LLILRTASTILIRLEVKVFGGD 191 (230)
T ss_pred HHCCC-----CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-------HH------HHHHHEEEEEEEEEEEEECCCE
T ss_conf 51677-----789999999999999858988999956331362-------45------4420410489999873610988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC--CCCE-EEEEEEECCCC
Q ss_conf 423333222111000000112338838999974089--9725-99999746854
Q gi|254780332|r 435 NKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRH--GPTG-TVTLAFQAEFT 485 (504)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~--G~~g-~~~~~f~~~~~ 485 (504)
T Consensus 192 ~~------------------------r~i~V~K~~ga~~~~~~~I~F~V~pg~G 221 (230)
T PRK08533 192 LK------------------------NSAKIVKYNMAKGSFQKIIPFRVEPGLG 221 (230)
T ss_pred EE------------------------EEEEEEEECCCCCCCCCEEEEEECCCCC
T ss_conf 99------------------------9999998448987778647899806876