HHsearch alignment for GI: 254780332 and conserved domain: PRK08760
>PRK08760 replicative DNA helicase; Provisional.
Probab=100.00 E-value=0 Score=947.54 Aligned_cols=458 Identities=38% Similarity=0.624 Sum_probs=430.1
Q ss_pred CCHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 11235527854301026789978999999999832978999999442966637988899999999999839986864388
Q gi|254780332|r 5 AQDIILSIPKEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVK 84 (504)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~ 84 (504)
T Consensus 15 ~~~~~~~~~~~~~~~~r~pPhniEAEqaVLGalLl~~~~~~~v~~~L~pedFY~~~H~~IF~ai~~L~~~g~piD~vTv~ 94 (476)
T PRK08760 15 RDDDDYDRPEPRVDQLRVPPHSVEAEQAVLGGLMLAPDALDKVNDQLTENDFYRRDHRLIYRAIRELSEKDRPFDAVTLG 94 (476)
T ss_pred CCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 77312589996411058999988999999999990830899999754987679888999999999999779988799999
Q ss_pred HHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 89731798323594899999996221122236778787899999999987655677512344453156668765544443
Q gi|254780332|r 85 TFLSDQDMLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFH 164 (504)
Q Consensus 85 ~~L~~~~~l~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~ 164 (504)
T Consensus 95 ~~L~~~~~le~iGG~~YL~~L~~~~ps~an~~~Ya~iVkeks~~R~li~~~~~i~~~a~~~~~-~d~~eil~~ae~~i~~ 173 (476)
T PRK08760 95 EWFESQGKLEQVGDGAYLIELASTTPSAANIAAYAEIVRDKAVLRQLIEVGTTIVNDGFQPEG-RESIELLASAEKAVFK 173 (476)
T ss_pred HHHHHCCCHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHH
T ss_conf 999647982324889999999971898889999999999999999999999999998637567-8789999999999999
Q ss_pred HHCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 20113-44665430134336778999998741123664432101377655641677267762131002769999999999
Q gi|254780332|r 165 LAENG-RYDGGFHTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 165 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~ 243 (504)
T Consensus 174 i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~Gi~TG~~~LD~~t~Gl~~G~LiViaaRPsmGKTalalnia~~~ 253 (476)
T PRK08760 174 IAEAGARGRTDFVAMPGALKDAFEELRNRFENGGNITGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYA 253 (476)
T ss_pred HHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98605767777300999999999999999857999533677968899744699877779998778874789999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECC
Q ss_conf 85101112333332124797589995852179998789999874101100012137688998999999986278078258
Q gi|254780332|r 244 ADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT 323 (504)
Q Consensus 244 A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~ 323 (504)
T Consensus 254 A~~--------------~~~~V~~fSLEMs~~ql~~Rlls~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~idD~ 319 (476)
T PRK08760 254 AIK--------------SKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDT 319 (476)
T ss_pred HHH--------------CCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECC
T ss_conf 983--------------799789970369999999999998338976777648999999999999999986088168579
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
Q ss_conf 99889999998864022444746776713532566443211378899999999999988279199977138220168999
Q gi|254780332|r 324 GGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNK 403 (504)
Q Consensus 324 ~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~k 403 (504)
T Consensus 320 ~~~t~~~ir~~~R~~k~~~~l~lvvIDYLqL~~~~~~~-~~r~~~v~~isr~lK~lAkel~vpVi~LsQLnR~~e~R~dk 398 (476)
T PRK08760 320 PGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNS-ENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDK 398 (476)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC
T ss_conf 99999999999999987279987999707641588887-44889999999999999999799789963157663447999
Q ss_pred CCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 98401014324223313878897255661644233332221110000001123388389999740899725999997468
Q gi|254780332|r 404 RPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAE 483 (504)
Q Consensus 404 rP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~ 483 (504)
T Consensus 399 rP~lsDLReSG~IEqdADvV~~l~R~~~y~~~~~~------------------~~~~~e~ivaKnR~G~~G~v~l~f~~~ 460 (476)
T PRK08760 399 RPVMADLRESGAIEQDADMIVFIYRDDYYNKENSP------------------DKGLAEIIIGKHRGGPTGSCKLKFFGE 460 (476)
T ss_pred CCCCCCCCCCCCHHHCCCEEEEECCHHHCCCCCCC------------------CCCEEEEEEECCCCCCCCEEEEEEECC
T ss_conf 98600112544203208689996245323876798------------------888079999746789862699998568
Q ss_pred CCCEEECCCCCCC
Q ss_conf 5402007744667
Q gi|254780332|r 484 FTRFSALSDSSYQ 496 (504)
Q Consensus 484 ~~~f~~~~~~~~~ 496 (504)
T Consensus 461 ~~rF~~~~~d~~~ 473 (476)
T PRK08760 461 YTRFDNLAHDSVG 473 (476)
T ss_pred CCCCCCCCCCCCC
T ss_conf 7770367765255