HHsearch alignment for GI: 254780332 and conserved domain: PRK08840
>PRK08840 replicative DNA helicase; Provisional.
Probab=100.00 E-value=0 Score=929.45 Aligned_cols=453 Identities=38% Similarity=0.629 Sum_probs=420.1
Q ss_pred HHCCCCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 52785430102678997899999999983297899999944296663798889999999999983998686438889731
Q gi|254780332|r 10 LSIPKEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSD 89 (504)
Q Consensus 10 ~~~~~~~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~ 89 (504)
T Consensus 7 ~~~~~~~~~~lr~pP~~~EAEqaVLGaiL~d~d~~~~v~~~L~pedFY~~~H~~IF~ai~~L~~~g~piD~vTv~~~L~~ 86 (464)
T PRK08840 7 RKIPDAQVDAIKVPPHSLEAEQSVLGGLLLDNERWDTVAEKVVAKDFYSRPHRLIFEAVKSILEDGKPLDLITLSEHLER 86 (464)
T ss_pred CCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 57980115543799998899999999998181079999964598757988999999999999977998889999999964
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 79832359489999999622112223677878789999999998765567751234445315666876554444320113
Q gi|254780332|r 90 QDMLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENG 169 (504)
Q Consensus 90 ~~~l~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~ 169 (504)
T Consensus 87 ~~~L~~iGG~~yL~~L~~~~ps~ani~~Ya~iVkeka~~R~li~~a~~i~~~~~d~~~~-~~~~il~~ae~~l~~i~~~~ 165 (464)
T PRK08840 87 REQLEDVGGFAYLADLAKNTPSAANINAYADIVAERALVRNLIGVANEIADAGYDPQGR-TSEDLLDMAESKVFAIAEER 165 (464)
T ss_pred CCCHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHCC
T ss_conf 69824327299999999719978889999999999999999999999999972256688-89999999999999997335
Q ss_pred C-CCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 4-4665430134336778999998741-1236644321013776556416772677621310027699999999998510
Q gi|254780332|r 170 R-YDGGFHTFSDAMTVAIDMAGQAFNR-DGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAY 247 (504)
Q Consensus 170 ~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~ 247 (504)
T Consensus 166 ~~~~~~~~~~~~~~~~~~e~ie~~~~~~~~~~~Gi~TG~~~LD~~~~Gl~~G~LiviaaRPsmGKTalalnia~n~a~~- 244 (464)
T PRK08840 166 TSENEGPQNVDSILEKTLERIELLYKSPQDGVTGVSTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD- 244 (464)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-
T ss_conf 6677640019999999999999998577999736888989998753698757679998379873689999999999996-
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCEEEECCCCC
Q ss_conf 11123333321247975899958521799987899998741011000121376889989999999862-78078258998
Q gi|254780332|r 248 KAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQK-LPLYIDQTGGI 326 (504)
Q Consensus 248 ~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~-~~l~I~d~~~~ 326 (504)
T Consensus 245 -------------~~~~v~~fSlEMs~~ql~~Rlls~~s~i~~~~ir~g~l~~~e~~~i~~a~~~~~~~~~l~idd~~~~ 311 (464)
T PRK08840 245 -------------QDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGL 311 (464)
T ss_pred -------------CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf -------------5996799767799899999999985389820111488899999999999999984799588569987
Q ss_pred CHHHHHHHHHHHCCCC-CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 8999999886402244-474677671353256644321137889999999999998827919997713822016899998
Q gi|254780332|r 327 SMSQLATRARRLKRQR-GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRP 405 (504)
Q Consensus 327 ti~~I~~~~r~~~~~~-gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP 405 (504)
T Consensus 312 t~~~i~a~~r~~~~~~~~l~lvvIDYLqL~~~~~~-~~~r~~~i~~isr~lK~lAkel~vpVv~lsQLnR~~e~r~dkrP 390 (464)
T PRK08840 312 TPTEVRSRARRVAREHGGLSMIMVDYLQLMRVPAL-QDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRP 390 (464)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC
T ss_conf 57999999999998648987899618866067886-40367899999999999999969989996316853111699998
Q ss_pred CCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf 40101432422331387889725566164423333222111000000112338838999974089972599999746854
Q gi|254780332|r 406 QLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFT 485 (504)
Q Consensus 406 ~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~ 485 (504)
T Consensus 391 ~lsDLReSG~IEqdAD~V~~l~R~~~y~~~~-------------------~~~~~~elivaKnR~G~~G~v~l~f~~~~~ 451 (464)
T PRK08840 391 VNSDLRESGSIEQDADLIMFIYRDEVYNPDS-------------------PLKGTAEIIIGKQRNGPIGSVRLTFQGQYS 451 (464)
T ss_pred CCCCCCCCCCHHHHCCEEEEECCHHHCCCCC-------------------CCCCEEEEEEECCCCCCCEEEEEEEECCCC
T ss_conf 7350125441054386899964431048988-------------------878806999972688986069999856877
Q ss_pred CEEECCCCCCCC
Q ss_conf 020077446677
Q gi|254780332|r 486 RFSALSDSSYQT 497 (504)
Q Consensus 486 ~f~~~~~~~~~~ 497 (504)
T Consensus 452 rF~~~~~~~~~~ 463 (464)
T PRK08840 452 RFDNYAGPAFDD 463 (464)
T ss_pred CCCCCCCCCCCC
T ss_conf 530368998788