HHsearch alignment for GI: 254780332 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=99.67  E-value=7.5e-15  Score=132.55  Aligned_cols=199  Identities=18%  Similarity=0.192  Sum_probs=139.7

Q ss_pred             CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r  202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR  280 (504)
Q Consensus       202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R  280 (504)
T Consensus       248 v~tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~---------------~GE~~l~~~FeE~~~~l~~~  312 (501)
T PRK09302        248 ISSGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACR---------------RGERCLLFAFEESRAQLVRN  312 (501)
T ss_pred             CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEEEECCHHHHHHH
T ss_conf             047973278872599758946999889998889999999999986---------------59908999996799999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEE--CCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf             99998741011000121376889989999999862780782--5899889999998864022444746776713532566
Q gi|254780332|r  281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYID--QTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTS  358 (504)
Q Consensus       281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~--d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~  358 (504)
T Consensus       313 a~~~--G~dl~~~~-------------------~~G~l~i~~~~p~~~~~~e~~~~i~~~v~~~~~~rVvIDsls~~~~~  371 (501)
T PRK09302        313 ATSW--GIDLEEME-------------------RKGLLKIICARPESTGLEDHLQIIKREIEEFKPSRVAVDPLSALARG  371 (501)
T ss_pred             HHHC--CCCHHHHH-------------------HCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf             9973--99848887-------------------48947999837000598999999999999729989999580687652


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCC
Q ss_conf             44321137889999999999998827919997713822016899998401014324223313878897255661644233
Q gi|254780332|r  359 KKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEP  438 (504)
Q Consensus       359 ~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~  438 (504)
T Consensus       372 ~~--~---~~~r~~l~~L~~~Lk~~gvT~l~t~~~~-~~~----g~~~~t~~----~iS~l~D~ii~Lry~E~~g~l---  434 (501)
T PRK09302        372 GS--L---NEFRQFVIRLTDYLKQEEITGLFTNLTP-DFM----GSHSITES----HISSLTDTWILLQYVEINGEM---  434 (501)
T ss_pred             CC--H---HHHHHHHHHHHHHHHHCCCEEEEEEECC-CCC----CCCCCCCC----CHHHHCCEEEEEEEEEECCEE---
T ss_conf             68--5---9999999999999976897899976123-556----76644766----600111247899987138999---


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE
Q ss_conf             332221110000001123388389999740899725
Q gi|254780332|r  439 TNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG  474 (504)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g  474 (504)
T Consensus       435 ---------------------~R~i~VlK~R~s~h~  449 (501)
T PRK09302        435 ---------------------NRALNVLKMRGSWHS  449 (501)
T ss_pred             ---------------------EEEEEEEEECCCCCC
T ss_conf             ---------------------898999993689657