HHsearch alignment for GI: 254780332 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=99.67 E-value=7.5e-15 Score=132.55 Aligned_cols=199 Identities=18% Similarity=0.192 Sum_probs=139.7
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
T Consensus 248 v~tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~---------------~GE~~l~~~FeE~~~~l~~~ 312 (501)
T PRK09302 248 ISSGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACR---------------RGERCLLFAFEESRAQLVRN 312 (501)
T ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEEEECCHHHHHHH
T ss_conf 047973278872599758946999889998889999999999986---------------59908999996799999999
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEE--CCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf 99998741011000121376889989999999862780782--5899889999998864022444746776713532566
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYID--QTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~--d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~ 358 (504)
T Consensus 313 a~~~--G~dl~~~~-------------------~~G~l~i~~~~p~~~~~~e~~~~i~~~v~~~~~~rVvIDsls~~~~~ 371 (501)
T PRK09302 313 ATSW--GIDLEEME-------------------RKGLLKIICARPESTGLEDHLQIIKREIEEFKPSRVAVDPLSALARG 371 (501)
T ss_pred HHHC--CCCHHHHH-------------------HCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 9973--99848887-------------------48947999837000598999999999999729989999580687652
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCC
Q ss_conf 44321137889999999999998827919997713822016899998401014324223313878897255661644233
Q gi|254780332|r 359 KKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEP 438 (504)
Q Consensus 359 ~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~ 438 (504)
T Consensus 372 ~~--~---~~~r~~l~~L~~~Lk~~gvT~l~t~~~~-~~~----g~~~~t~~----~iS~l~D~ii~Lry~E~~g~l--- 434 (501)
T PRK09302 372 GS--L---NEFRQFVIRLTDYLKQEEITGLFTNLTP-DFM----GSHSITES----HISSLTDTWILLQYVEINGEM--- 434 (501)
T ss_pred CC--H---HHHHHHHHHHHHHHHHCCCEEEEEEECC-CCC----CCCCCCCC----CHHHHCCEEEEEEEEEECCEE---
T ss_conf 68--5---9999999999999976897899976123-556----76644766----600111247899987138999---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE
Q ss_conf 332221110000001123388389999740899725
Q gi|254780332|r 439 TNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG 474 (504)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g 474 (504)
T Consensus 435 ---------------------~R~i~VlK~R~s~h~ 449 (501)
T PRK09302 435 ---------------------NRALNVLKMRGSWHS 449 (501)
T ss_pred ---------------------EEEEEEEEECCCCCC
T ss_conf ---------------------898999993689657