HHsearch alignment for GI: 254780332 and conserved domain: PRK09452
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed.
Probab=97.31 E-value=0.0025 Score=44.78 Aligned_cols=147 Identities=15% Similarity=0.241 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----CCCCCEEEE-------------
Q ss_conf 01377655641677267762131002769999999999851011123333321-----247975899-------------
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYK-----TINGGIVGF------------- 267 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~-----~~~g~~Vl~------------- 267 (504)
T Consensus 30 ~~aL~~vsl~I~~GE~~~llGpSGsGKSTLlr~ia-Gl~~p~sG~I~~~G~~v~~~~~~~R~ig~VfQ~~aLfp~lTV~e 108 (378)
T PRK09452 30 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIA-GFETPDSGRIMLDGQDITHVPAENRYVNTVFQSYALFPHMTVFE 108 (378)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 99993627799999899999899976999999997-69999846999999998989978988589922764378986999
Q ss_pred ---EECC---CCHHHHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCH-----HHHHH
Q ss_conf ---9585---217999878999987410110001---213768899899999998627807825899889-----99999
Q gi|254780332|r 268 ---YSLE---MSSEQLATRIISEQTEVPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTGGISM-----SQLAT 333 (504)
Q Consensus 268 ---fSlE---Ms~~el~~R~is~~s~I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti-----~~I~~ 333 (504)
T Consensus 109 Nv~~~l~~~~~~~~e~~~rv~e~L~~v~L~~~~~r~p~~LSGGqqQRVaiARAL~~~P~vLLLDEPts~LD~~~r~~~~~ 188 (378)
T PRK09452 109 NVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQN 188 (378)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 99989976599879999999999875073435436835499889999999998623998999578644479999999999
Q ss_pred HHHHHCCCCCCCEEEECCHH
Q ss_conf 88640224447467767135
Q gi|254780332|r 334 RARRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 334 ~~r~~~~~~gi~~vvIDYLq 353 (504)
T Consensus 189 ~l~~l~~~~g~T~i~VTHD~ 208 (378)
T PRK09452 189 ELKALQRKLGITFVFVTHDQ 208 (378)
T ss_pred HHHHHHHHHCCEEEEECCCH
T ss_conf 99999998499899998899