HHsearch alignment for GI: 254780332 and conserved domain: PRK09519
>PRK09519 recA recombinase A; Reviewed.
Probab=98.80 E-value=1.6e-06 Score=69.11 Aligned_cols=179 Identities=20% Similarity=0.317 Sum_probs=113.1
Q ss_pred CCCCCCCCHHHHHHH--HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 664432101377655--641677267762131002769999999999851011123333321247975899958521799
Q gi|254780332|r 199 LAGVSTGIQTLDKQM--GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQ 276 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~--gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~e 276 (504)
T Consensus 38 v~~IsTGSl~LD~ALGiGG~PrGRIvEIyGpESSGKTTLALH~IAeaQK---------------~GG~aAfIDAEhAlDp 102 (790)
T PRK09519 38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA---------------AGGVAAFIDAEHALDP 102 (790)
T ss_pred CCEECCCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCCCCCH
T ss_conf 5445046167888761688466049998789776589999999999985---------------3997999952002599
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 98789999874101100012137688998999999986278078258998899999988640224447467767135325
Q gi|254780332|r 277 LATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 277 l~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
T Consensus 103 ~y----A~~LGVdld~LL-------------------------is-QPd-tGEqALeIae~LIrSgavDlIVVDSVAALv 151 (790)
T PRK09519 103 DY----AKKLGVDTDSLL-------------------------VS-QPD-TGEQALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred HH----HHHHCCCHHHCE-------------------------EE-CCC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 99----998395767806-------------------------85-798-088999999999854895489980534568
Q ss_pred CCC----CCCCH----HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-------CCCCCCCC--CC----CCCCCCCH
Q ss_conf 664----43211----378899999999999988279199977138220-------16899998--40----10143242
Q gi|254780332|r 357 TSK----KIEEN----RVLEITGITMALKALAKELNIPIIALSQLSRQV-------ENRDNKRP--QL----SDLRESGS 415 (504)
Q Consensus 357 ~~~----~~~~~----r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~-------e~r~~krP--~l----sDLr~Sg~ 415 (504)
T Consensus 152 PKaEieGemgD~~vGlQARLMSqALRKLT~~I~ks~t~vIFINQlReKIGVMFGnPETT~GGrALKFYASVRldiRr~~~ 231 (790)
T PRK09519 152 PRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVET 231 (790)
T ss_pred CHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
T ss_conf 78886164566428899999999999998776307749999421045405703799878886421222125775554120
Q ss_pred HHHHCCEE
Q ss_conf 23313878
Q gi|254780332|r 416 IEQDADVV 423 (504)
Q Consensus 416 IEqdAD~v 423 (504)
T Consensus 232 IK~G~~~i 239 (790)
T PRK09519 232 LKDGTNAV 239 (790)
T ss_pred CCCCCCCC
T ss_conf 02677220