HHsearch alignment for GI: 254780332 and conserved domain: PRK09519

>PRK09519 recA recombinase A; Reviewed.
Probab=98.80  E-value=1.6e-06  Score=69.11  Aligned_cols=179  Identities=20%  Similarity=0.317  Sum_probs=113.1

Q ss_pred             CCCCCCCCHHHHHHH--HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf             664432101377655--641677267762131002769999999999851011123333321247975899958521799
Q gi|254780332|r  199 LAGVSTGIQTLDKQM--GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQ  276 (504)
Q Consensus       199 ~~Gi~TG~~~LD~~~--gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~e  276 (504)
T Consensus        38 v~~IsTGSl~LD~ALGiGG~PrGRIvEIyGpESSGKTTLALH~IAeaQK---------------~GG~aAfIDAEhAlDp  102 (790)
T PRK09519         38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA---------------AGGVAAFIDAEHALDP  102 (790)
T ss_pred             CCEECCCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCCCCCH
T ss_conf             5445046167888761688466049998789776589999999999985---------------3997999952002599


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf             98789999874101100012137688998999999986278078258998899999988640224447467767135325
Q gi|254780332|r  277 LATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMT  356 (504)
Q Consensus       277 l~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~  356 (504)
T Consensus       103 ~y----A~~LGVdld~LL-------------------------is-QPd-tGEqALeIae~LIrSgavDlIVVDSVAALv  151 (790)
T PRK09519        103 DY----AKKLGVDTDSLL-------------------------VS-QPD-TGEQALEIADMLIRSGALDIVVIDSVAALV  151 (790)
T ss_pred             HH----HHHHCCCHHHCE-------------------------EE-CCC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             99----998395767806-------------------------85-798-088999999999854895489980534568


Q ss_pred             CCC----CCCCH----HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-------CCCCCCCC--CC----CCCCCCCH
Q ss_conf             664----43211----378899999999999988279199977138220-------16899998--40----10143242
Q gi|254780332|r  357 TSK----KIEEN----RVLEITGITMALKALAKELNIPIIALSQLSRQV-------ENRDNKRP--QL----SDLRESGS  415 (504)
Q Consensus       357 ~~~----~~~~~----r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~-------e~r~~krP--~l----sDLr~Sg~  415 (504)
T Consensus       152 PKaEieGemgD~~vGlQARLMSqALRKLT~~I~ks~t~vIFINQlReKIGVMFGnPETT~GGrALKFYASVRldiRr~~~  231 (790)
T PRK09519        152 PRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVET  231 (790)
T ss_pred             CHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
T ss_conf             78886164566428899999999999998776307749999421045405703799878886421222125775554120


Q ss_pred             HHHHCCEE
Q ss_conf             23313878
Q gi|254780332|r  416 IEQDADVV  423 (504)
Q Consensus       416 IEqdAD~v  423 (504)
T Consensus       232 IK~G~~~i  239 (790)
T PRK09519        232 LKDGTNAV  239 (790)
T ss_pred             CCCCCCCC
T ss_conf             02677220